RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 DAB2P98082 770 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 WIPI1Q5MNZ9 446 aaPredicted RBP5.78□□□□□ -1.48
USP54-217ENST00000498213 MEI1Q5TIA1 1274 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 LRFN4Q6PJG9 635 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 NETO1Q8TDF5 533 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 MISP3Q96FF7 219 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 PLPPR2Q96GM1 343 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 MIR1-1HGQ9H1L0 117 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 RNF19AQ9NV58 838 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 FMN2Q9NZ56 1722 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 VTI1BQ9UEU0 232 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 GTF2IRD1Q9UHL9 959 aa5.78□□□□□ -1.48
USP54-217ENST00000498213 PARP4Q9UKK3 1724 aaKnown RBP5.77□□□□□ -1.49
USP54-217ENST00000498213 CRB1P82279 1406 aa5.77□□□□□ -1.49
USP54-217ENST00000498213 SORBS3O60504 671 aa5.77□□□□□ -1.49
USP54-217ENST00000498213 LIG3P49916 1009 aa5.77□□□□□ -1.49
USP54-217ENST00000498213 SOX10P56693 466 aa5.77□□□□□ -1.49
USP54-217ENST00000498213 SEPT6Q14141 434 aa5.77□□□□□ -1.49
USP54-217ENST00000498213 INPP5AQ14642 412 aa5.77□□□□□ -1.49
USP54-217ENST00000498213 TAF1CQ15572 869 aaPredicted RBP5.77□□□□□ -1.49
USP54-217ENST00000498213 TMC4Q7Z404 712 aa5.77□□□□□ -1.49
USP54-217ENST00000498213 PLD6Q8N2A8 252 aaKnown RBP5.77□□□□□ -1.49
USP54-217ENST00000498213 FAM161BQ96MY7 647 aa5.77□□□□□ -1.49
USP54-217ENST00000498213 MCOLN1Q9GZU1 580 aa5.77□□□□□ -1.49
USP54-217ENST00000498213 SNCAIPQ9Y6H5 919 aa5.77□□□□□ -1.49
USP54-217ENST00000498213 E9PCH4 1651 aa5.77□□□□□ -1.49
USP54-217ENST00000498213 BRD4O60885 1362 aaPredicted RBP5.77□□□□□ -1.49
USP54-217ENST00000498213 BCL9O00512 1426 aa5.76□□□□□ -1.49
USP54-217ENST00000498213 USP6P35125 1406 aa5.76□□□□□ -1.49
USP54-217ENST00000498213 GNAT3A8MTJ3 354 aa5.76□□□□□ -1.49
USP54-217ENST00000498213 CEACAM5P06731 702 aa5.76□□□□□ -1.49
USP54-217ENST00000498213 IFI16Q16666 785 aaKnown RBP5.76□□□□□ -1.49
USP54-217ENST00000498213 ARMCX6Q7L4S7 300 aa5.76□□□□□ -1.49
USP54-217ENST00000498213 GAL3ST3Q96A11 431 aa5.76□□□□□ -1.49
USP54-217ENST00000498213 CRELD1Q96HD1 420 aa5.76□□□□□ -1.49
USP54-217ENST00000498213 KRTAP4-2Q9BYR5 136 aa5.76□□□□□ -1.49
USP54-217ENST00000498213 RNF181Q9P0P0 153 aa5.76□□□□□ -1.49
USP54-217ENST00000498213 LRRC37A3O60309 1634 aa5.76□□□□□ -1.49
USP54-217ENST00000498213 CNTNAP1P78357 1384 aa5.76□□□□□ -1.49
USP54-217ENST00000498213 RGPD8O14715 1765 aaPredicted RBP5.75□□□□□ -1.49
USP54-217ENST00000498213 CUL9Q8IWT3 2517 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 A0A0G2JLW4 131 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 LRIG2O94898 1065 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 PAPLNO95428 1278 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 VEGFAP15692 232 aaPredicted RBP5.75□□□□□ -1.49
USP54-217ENST00000498213 ST13P50502 369 aaKnown RBP5.75□□□□□ -1.49
USP54-217ENST00000498213 PTPN11Q06124 597 aaPredicted RBP5.75□□□□□ -1.49
USP54-217ENST00000498213 PLCL1Q15111 1095 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 HABP4Q5JVS0 413 aaKnown RBP5.75□□□□□ -1.49
USP54-217ENST00000498213 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.75□□□□□ -1.49
USP54-217ENST00000498213 AGMOQ6ZNB7 445 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 FBXO33Q7Z6M2 555 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 BCL7CQ8WUZ0 217 aaPredicted RBP5.75□□□□□ -1.49
USP54-217ENST00000498213 HRASLS5Q96KN8 279 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 NOC4LQ9BVI4 516 aaKnown RBP5.75□□□□□ -1.49
USP54-217ENST00000498213 WNT10AQ9GZT5 417 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 MKNK2Q9HBH9 465 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 PRDM5Q9NQX1 630 aaPredicted RBP5.75□□□□□ -1.49
USP54-217ENST00000498213 TPX2Q9ULW0 747 aaKnown RBP5.75□□□□□ -1.49
USP54-217ENST00000498213 PCDHB5Q9Y5E4 795 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 NUP155O75694 1391 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 ABCC11Q96J66 1382 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 ANKRD30BQ9BXX2 1392 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 COL5A2P05997 1499 aaPredicted RBP5.75□□□□□ -1.49
USP54-217ENST00000498213 ALS2Q96Q42 1657 aa5.75□□□□□ -1.49
USP54-217ENST00000498213 TRPM3Q9HCF6 1732 aaPredicted RBP5.74□□□□□ -1.49
USP54-217ENST00000498213 TMEM265A0A087WTH1 108 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 BIN1O00499 593 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 BPNT1O95861 308 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 NTF4P34130 210 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 RING1Q06587 406 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 ZNF648Q5T619 568 aaPredicted RBP5.74□□□□□ -1.49
USP54-217ENST00000498213 ZNF574Q6ZN55 896 aaPredicted RBP5.74□□□□□ -1.49
USP54-217ENST00000498213 CYFIP1Q7L576 1253 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 UBE3DQ7Z6J8 389 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 HID1Q8IV36 788 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 SLC17A8Q8NDX2 589 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 JARID2Q92833 1246 aaPredicted RBP5.74□□□□□ -1.49
USP54-217ENST00000498213 PRAM1Q96QH2 718 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 MIPEPQ99797 713 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 FOXQ1Q9C009 403 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 COL24A1Q17RW2 1714 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 CLTCL1P53675 1640 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 C10orf71Q711Q0 1435 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 ADGRF5Q8IZF2 1346 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 PRR36Q9H6K5 1346 aa5.74□□□□□ -1.49
USP54-217ENST00000498213 PXDNLA1KZ92 1463 aa5.73□□□□□ -1.49
USP54-217ENST00000498213 PLEKHG2Q9H7P9 1386 aa5.73□□□□□ -1.49
USP54-217ENST00000498213 GRK4P32298 578 aa5.73□□□□□ -1.49
USP54-217ENST00000498213 OXCT1P55809 520 aa5.73□□□□□ -1.49
USP54-217ENST00000498213 PRKCQQ04759 706 aa5.73□□□□□ -1.49
USP54-217ENST00000498213 PDE4BQ07343 736 aa5.73□□□□□ -1.49
USP54-217ENST00000498213 FAM50AQ14320 339 aaKnown RBP5.73□□□□□ -1.49
USP54-217ENST00000498213 AOC3Q16853 763 aa5.73□□□□□ -1.49
USP54-217ENST00000498213 TSNAXIP1Q2TAA8 658 aa5.73□□□□□ -1.49
USP54-217ENST00000498213 ZNF792Q3KQV3 632 aa5.73□□□□□ -1.49
USP54-217ENST00000498213 ZNF746Q6NUN9 644 aaPredicted RBP5.73□□□□□ -1.49
USP54-217ENST00000498213 BCL2L13Q9BXK5 485 aa5.73□□□□□ -1.49
USP54-217ENST00000498213 VAV3Q9UKW4 847 aa5.73□□□□□ -1.49
USP54-217ENST00000498213 CPDO75976 1380 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms