RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 ZNF274Q96GC6 653 aaPredicted RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 TRIM33Q9UPN9 1127 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 PSDA5PKW4 1024 aaPredicted RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 METTL21EPA6NDL7 271 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 SNCGO76070 127 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 TRIM37O94972 964 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 HLA-DPA1P20036 260 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 CASP1P29466 404 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 NCKAP1LP55160 1127 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 EFTUD2Q15029 972 aaKnown RBP eCLIP6.37□□□□□ -1.39
USF3-204ENST00000496826 WLSQ5T9L3 541 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 SLFN12LQ6IEE8 588 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 TLK2Q86UE8 772 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 FAM227BQ96M60 508 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 FGD4Q96M96 766 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 FAM161BQ96MY7 647 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 CATSPER2Q96P56 530 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 TBC1D2Q9BYX2 928 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 MORC2Q9Y6X9 1032 aaPredicted RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 LRRD1A4D1F6 860 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 VGLL3A8MV65 326 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 TLR3O15455 904 aaKnown RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 OPHN1O60890 802 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 N4BP1O75113 896 aaKnown RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 TERF2Q15554 542 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 KRT26Q7Z3Y9 468 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 CNNM3Q8NE01 707 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 ZBTB18Q99592 522 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 FAM96AQ9H5X1 160 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 BICC1Q9H694 974 aaKnown RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 C10orf88Q9H8K7 445 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 FGFR1OP2Q9NVK5 253 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 TRPC5Q9UL62 973 aaPredicted RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 ARL2BPQ9Y2Y0 163 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 PCDHGB3Q9Y5G1 929 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 TRIM16O95361 564 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 FOSP01100 380 aaPredicted RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 PARP1P09874 1014 aaKnown RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 UBTFL1P0CB47 393 aaPredicted RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 TGFBR2P37173 567 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 GUCY1B3Q02153 619 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 KRT71Q3SY84 523 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 FCHSD1Q86WN1 690 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 NOSTRINQ8IVI9 506 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 NDE1Q9NXR1 346 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 MGAT4AQ9UM21 535 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 ZNF24P17028 368 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 ATF7P17544 494 aaPredicted RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 RXRAP19793 462 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 OCRLQ01968 901 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 RIPPLY1Q0D2K3 151 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 MMEL1Q495T6 779 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 CDKL2Q92772 493 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 UBE2OQ9C0C9 1292 aaKnown RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 COMMD9Q9P000 198 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 VTI1BQ9UEU0 232 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 PRKAG2Q9UGJ0 569 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 ATP8B3O60423 1300 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 SLC9A5Q14940 896 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 PEG10Q86TG7 708 aaKnown RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 SESTD1Q86VW0 696 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 HS6ST3Q8IZP7 471 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 MIGA1Q8NAN2 632 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 FAM81AQ8TBF8 368 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 RBM46Q8TBY0 533 aaKnown RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 ERO1AQ96HE7 468 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 KLHL3Q9UH77 587 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.37□□□□□ -1.39
USF3-204ENST00000496826 WBP11Q9Y2W2 641 aaKnown RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 THAP12O43422 761 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 ATP9AO75110 1047 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 FCHO2Q0JRZ9 810 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 CEP78Q5JTW2 689 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 CDR2LQ86X02 465 aaPredicted RBP6.37□□□□□ -1.39
USF3-204ENST00000496826 VPS50Q96JG6 964 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 VPS35Q96QK1 796 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 RAD18Q9NS91 495 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 DNAJC12Q9UKB3 198 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 SPEF1Q9Y4P9 236 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 SAMM50Q9Y512 469 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 PSAT1Q9Y617 370 aa6.37□□□□□ -1.39
USF3-204ENST00000496826 HLA-DRAP01903 254 aa6.36□□□□□ -1.39
USF3-204ENST00000496826 CDH2P19022 906 aaPredicted RBP6.36□□□□□ -1.39
USF3-204ENST00000496826 PTPREP23469 700 aa6.36□□□□□ -1.39
USF3-204ENST00000496826 MAP4P27816 1152 aaKnown RBP6.36□□□□□ -1.39
USF3-204ENST00000496826 ELF1P32519 619 aa6.36□□□□□ -1.39
USF3-204ENST00000496826 CCT5P48643 541 aa6.36□□□□□ -1.39
USF3-204ENST00000496826 FKBP5Q13451 457 aaPredicted RBP6.36□□□□□ -1.39
USF3-204ENST00000496826 IDI1Q13907 227 aa6.36□□□□□ -1.39
USF3-204ENST00000496826 CBFBQ13951 182 aa6.36□□□□□ -1.39
USF3-204ENST00000496826 KIF22Q14807 665 aa6.36□□□□□ -1.39
USF3-204ENST00000496826 EZH2Q15910 746 aaKnown RBP6.36□□□□□ -1.39
USF3-204ENST00000496826 NBPF1Q3BBV0 1214 aa6.36□□□□□ -1.39
USF3-204ENST00000496826 GPATCH4Q5T3I0 446 aaKnown RBP6.36□□□□□ -1.39
USF3-204ENST00000496826 MEI1Q5TIA1 1274 aa6.36□□□□□ -1.39
USF3-204ENST00000496826 FOXD4L5Q5VV16 416 aaPredicted RBP6.36□□□□□ -1.39
USF3-204ENST00000496826 KANSL1Q7Z3B3 1105 aa6.36□□□□□ -1.39
USF3-204ENST00000496826 FOXD4L4Q8WXT5 416 aaPredicted RBP6.36□□□□□ -1.39
USF3-204ENST00000496826 MKNK2Q9HBH9 465 aa6.36□□□□□ -1.39
USF3-204ENST00000496826 CACNA2D2Q9NY47 1150 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms