RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 SHMT1P34896 483 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 EVX2Q03828 476 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 FAM160A1Q05DH4 1040 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 TRAF1Q13077 416 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 UVSSAQ2YD98 709 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 CYP4F22Q6NT55 531 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 SASS6Q6UVJ0 657 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 MOB2Q70IA6 237 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 FASTKD5Q7L8L6 764 aaKnown RBP11.74□□□□□ -0.53
HDAC3-214ENST00000495485 CMTR1Q8N1G2 835 aaKnown RBP11.74□□□□□ -0.53
HDAC3-214ENST00000495485 OPTNQ96CV9 577 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 GLT8D2Q9H1C3 349 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 DNAJC18Q9H819 358 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 ELP3Q9H9T3 547 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 C6orf50Q9HD87 102 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 DACT1Q9NYF0 836 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 HOOK1Q9UJC3 728 aaKnown RBP11.74□□□□□ -0.53
HDAC3-214ENST00000495485 PCDHA7Q9UN72 937 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 KCNJ14Q9UNX9 436 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 CLIC4Q9Y696 253 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 MYH4Q9Y623 1939 aa11.74□□□□□ -0.53
HDAC3-214ENST00000495485 TRIM75PA6NK02 468 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 KIF28PB7ZC32 967 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 AKR1B1P15121 316 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 CMA1P23946 247 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 GUCY1A2P33402 732 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 USP14P54578 494 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 PABPC4Q13310 644 aaKnown RBP eCLIP11.73□□□□□ -0.53
HDAC3-214ENST00000495485 ABCB5Q2M3G0 1257 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 KRI1Q8N9T8 703 aaKnown RBP11.73□□□□□ -0.53
HDAC3-214ENST00000495485 FSIP1Q8NA03 581 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 ZNF280CQ8ND82 737 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 DCAF4Q8WV16 495 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 ZKSCAN4Q969J2 545 aaPredicted RBP11.73□□□□□ -0.53
HDAC3-214ENST00000495485 MKL1Q969V6 931 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 PGBD1Q96JS3 809 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 CFHR5Q9BXR6 569 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 GREB1LQ9C091 1923 aaPredicted RBP11.73□□□□□ -0.53
HDAC3-214ENST00000495485 CLSTN2Q9H4D0 955 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 FAM13BQ9NYF5 915 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 VPS54Q9P1Q0 977 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 ZBTB21Q9ULJ3 1066 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 SLC45A1Q9Y2W3 748 aa11.73□□□□□ -0.53
HDAC3-214ENST00000495485 NOM1Q5C9Z4 860 aaKnown RBP11.72□□□□□ -0.53
HDAC3-214ENST00000495485 BLIDQ8IZY5 108 aa11.72□□□□□ -0.53
HDAC3-214ENST00000495485 DAGLBQ8NCG7 672 aa11.72□□□□□ -0.53
HDAC3-214ENST00000495485 PROCA1Q8NCQ7 364 aaPredicted RBP11.72□□□□□ -0.53
HDAC3-214ENST00000495485 OTUD5Q96G74 571 aa11.72□□□□□ -0.53
HDAC3-214ENST00000495485 CLMNQ96JQ2 1002 aa11.72□□□□□ -0.53
HDAC3-214ENST00000495485 SDF4Q9BRK5 362 aa11.72□□□□□ -0.53
HDAC3-214ENST00000495485 PYM1Q9BRP8 204 aaKnown RBP11.72□□□□□ -0.53
HDAC3-214ENST00000495485 ARHGEF10LQ9HCE6 1279 aa11.72□□□□□ -0.53
HDAC3-214ENST00000495485 GJB4Q9NTQ9 266 aa11.72□□□□□ -0.53
HDAC3-214ENST00000495485 BARHL2Q9NY43 387 aa11.72□□□□□ -0.53
HDAC3-214ENST00000495485 PCDHA4Q9UN74 947 aa11.72□□□□□ -0.53
HDAC3-214ENST00000495485 AFG3L2Q9Y4W6 797 aa11.72□□□□□ -0.53
HDAC3-214ENST00000495485 A0A0G2JLL6 359 aaPredicted RBP11.71□□□□□ -0.53
HDAC3-214ENST00000495485 CCDC194A0A1B0GVG4 234 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 USP17L10C9JJH3 530 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 IRF6O14896 467 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 PDHBP11177 359 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 LIG1P18858 919 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 NAPAP54920 295 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 ATP2B2Q01814 1243 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 SH3D19Q5HYK7 790 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 MCTP2Q6DN12 878 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 KANK3Q6NY19 840 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 PPP1R18Q6NYC8 613 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 HEATR3Q7Z4Q2 680 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 PRRT2Q7Z6L0 340 aaPredicted RBP11.71□□□□□ -0.53
HDAC3-214ENST00000495485 STAG2Q8N3U4 1231 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 ZNF579Q8NAF0 562 aaKnown RBP11.71□□□□□ -0.53
HDAC3-214ENST00000495485 FERMT2Q96AC1 680 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 TIGD1Q96MW7 591 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 RIOX1Q9H6W3 641 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 MTMR7Q9Y216 660 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 ZHX2Q9Y6X8 837 aa11.71□□□□□ -0.53
HDAC3-214ENST00000495485 LOC285556D6RIA3 1793 aa11.71□□□□□ -0.54
HDAC3-214ENST00000495485 ESYT2A0FGR8 921 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 NR1I2O75469 434 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 GH2P01242 217 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 SNHG28P0DPA3 235 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 XRCC6P12956 609 aaKnown RBP eCLIP11.7□□□□□ -0.54
HDAC3-214ENST00000495485 BACE1P56817 501 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 HTRA3P83110 453 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 ICA1Q05084 483 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 ZNF543Q08ER8 600 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 CCDC96Q2M329 555 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 USP17L2Q6R6M4 530 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 KRT25Q7Z3Z0 450 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 ANKRD23Q86SG2 305 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 GAS2L3Q86XJ1 694 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 GTF3C2Q8WUA4 911 aaPredicted RBP11.7□□□□□ -0.54
HDAC3-214ENST00000495485 LPAR1Q92633 364 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 MS4A4AQ96JQ5 239 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 GOPCQ9HD26 462 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 WBP1LQ9NX94 342 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 PNMA3Q9UL41 463 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 FZD1Q9UP38 647 aa11.7□□□□□ -0.54
HDAC3-214ENST00000495485 CCL15-CCL14A0A0B4J2E2 113 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms