RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 RNF41Q9H4P4 317 aaPredicted RBP17.2■□□□□ 0.34
SDF4-207ENST00000494748 IQSEC3Q9UPP2 1182 aaPredicted RBP17.2■□□□□ 0.34
SDF4-207ENST00000494748 PHLPP1O60346 1717 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 TTMPQ5BVD1 217 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 EHBP1Q8NDI1 1231 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 SDR42E1Q8WUS8 393 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 RMND1Q9NWS8 449 aa17.2■□□□□ 0.34
SDF4-207ENST00000494748 KRT86O43790 486 aa17.19■□□□□ 0.34
SDF4-207ENST00000494748 LRRC1Q9BTT6 524 aa17.19■□□□□ 0.34
SDF4-207ENST00000494748 SNX12Q9UMY4 172 aa17.19■□□□□ 0.34
SDF4-207ENST00000494748 B4DLN1 442 aa17.19■□□□□ 0.34
SDF4-207ENST00000494748 ITIH3Q06033 890 aa17.19■□□□□ 0.34
SDF4-207ENST00000494748 SKIDA1Q1XH10 827 aa17.19■□□□□ 0.34
SDF4-207ENST00000494748 MICALL1Q8N3F8 863 aa17.19■□□□□ 0.34
SDF4-207ENST00000494748 SRBD1Q8N5C6 995 aaKnown RBP17.19■□□□□ 0.34
SDF4-207ENST00000494748 SMCR8Q8TEV9 937 aaPredicted RBP17.19■□□□□ 0.34
SDF4-207ENST00000494748 CAPN6Q9Y6Q1 641 aa17.19■□□□□ 0.34
SDF4-207ENST00000494748 EPB41P11171 864 aaKnown RBP17.18■□□□□ 0.34
SDF4-207ENST00000494748 KIAA1328Q86T90 577 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 COL5A2P05997 1499 aaPredicted RBP17.18■□□□□ 0.34
SDF4-207ENST00000494748 PDE8AO60658 829 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 CYP27A1Q02318 531 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 AEBP2Q6ZN18 517 aaPredicted RBP17.18■□□□□ 0.34
SDF4-207ENST00000494748 PIK3AP1Q6ZUJ8 805 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 CAPS2Q9BXY5 557 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 IDEP14735 1019 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 MCM7P33993 719 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 LIG3P49916 1009 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 SKOR1P84550 965 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 KCNB1Q14721 858 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 MIIPQ5JXC2 388 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 AMOTL1Q8IY63 956 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 CCDC170Q8IYT3 715 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 ESR2Q92731 530 aa17.18■□□□□ 0.34
SDF4-207ENST00000494748 KIAA1551Q9HCM1 1747 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 FGRP09769 529 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 TRAPPC10P48553 1259 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 DNM2P50570 870 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 CDK17Q00537 523 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 FNBP4Q8N3X1 1017 aaPredicted RBP17.17■□□□□ 0.34
SDF4-207ENST00000494748 RUBCNQ92622 972 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 ARL8AQ96BM9 186 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 PYM1Q9BRP8 204 aaKnown RBP17.17■□□□□ 0.34
SDF4-207ENST00000494748 COL1A1P02452 1464 aaPredicted RBP17.17■□□□□ 0.34
SDF4-207ENST00000494748 CASZ1Q86V15 1759 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 SND1Q7KZF4 910 aaKnown RBP eCLIP17.17■□□□□ 0.341e-7■■□□□ 12.1
SDF4-207ENST00000494748 PROSER2Q86WR7 435 aaPredicted RBP17.17■□□□□ 0.34
SDF4-207ENST00000494748 GIMAP8Q8ND71 665 aaPredicted RBP17.17■□□□□ 0.34
SDF4-207ENST00000494748 RBM28Q9NW13 759 aaKnown RBP17.17■□□□□ 0.34
SDF4-207ENST00000494748 ASAP1Q9ULH1 1129 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 LAMB2P55268 1798 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 ERLIN2O94905 339 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 PLEKP08567 350 aaPredicted RBP17.17■□□□□ 0.34
SDF4-207ENST00000494748 BCAMP50895 628 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 VAV2P52735 878 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 MCTP2Q6DN12 878 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 FAM107BQ9H098 131 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 DISC1Q9NRI5 854 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 FAM205AQ6ZU69 1335 aa17.17■□□□□ 0.34
SDF4-207ENST00000494748 CYP2D7A0A087X1C5 515 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 MACROD2A1Z1Q3 448 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 SLC5A1P13866 664 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 ZBED6P86452 979 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 ARL6IP4Q66PJ3 421 aaKnown RBP17.16■□□□□ 0.34
SDF4-207ENST00000494748 KRT26Q7Z3Y9 468 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 BCAS4Q8TDM0 211 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 NCAPGQ9BPX3 1015 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 EXOC1Q9NV70 894 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 SCN7AQ01118 1682 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 MINDY4BA8MYZ0 360 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 RHOBTB3O94955 611 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 CYLC1P35663 651 aaPredicted RBP17.16■□□□□ 0.34
SDF4-207ENST00000494748 LONP1P36776 959 aaKnown RBP17.16■□□□□ 0.34
SDF4-207ENST00000494748 GNGT1P63211 74 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 MRPS25P82663 173 aaKnown RBP17.16■□□□□ 0.34
SDF4-207ENST00000494748 EVX2Q03828 476 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 HAUS3Q68CZ6 603 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 GBP6Q6ZN66 633 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 CAGE1Q8TC20 777 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 RABEP2Q9H5N1 569 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 LRWD1Q9UFC0 647 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 ABCA3Q99758 1704 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 GOLGA8KD6RF30 607 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 SPATA4Q8NEY3 305 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 CEP89Q96ST8 783 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 RIOK1Q9BRS2 568 aaKnown RBP17.16■□□□□ 0.34
SDF4-207ENST00000494748 TUBGCP2Q9BSJ2 902 aa17.16■□□□□ 0.34
SDF4-207ENST00000494748 ATXN2Q99700 1313 aaKnown RBP17.15■□□□□ 0.34
SDF4-207ENST00000494748 PP2D1A8MPX8 630 aa17.15■□□□□ 0.34
SDF4-207ENST00000494748 PRLRP16471 622 aa17.15■□□□□ 0.34
SDF4-207ENST00000494748 HNRNPH1P31943 449 aaKnown RBP17.15■□□□□ 0.34
SDF4-207ENST00000494748 FNTAP49354 379 aa17.15■□□□□ 0.34
SDF4-207ENST00000494748 IFIT1BQ5T764 474 aaKnown RBP17.15■□□□□ 0.34
SDF4-207ENST00000494748 FBXW10Q5XX13 1052 aa17.15■□□□□ 0.34
SDF4-207ENST00000494748 ZSCAN29Q8IWY8 852 aaPredicted RBP17.15■□□□□ 0.34
SDF4-207ENST00000494748 SH2D4AQ9H788 454 aa17.15■□□□□ 0.34
SDF4-207ENST00000494748 JADE2Q9NQC1 790 aa17.15■□□□□ 0.34
SDF4-207ENST00000494748 SMARCAL1Q9NZC9 954 aa17.15■□□□□ 0.34
SDF4-207ENST00000494748 EBAG9O00559 213 aa17.15■□□□□ 0.34
SDF4-207ENST00000494748 TNFRSF8P28908 595 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms