RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 CEP85Q6P2H3 762 aa17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 ARMCX2Q7L311 632 aa17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 PRPF38AQ8NAV1 312 aaKnown RBP17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 NECAB3Q96P71 396 aaPredicted RBP17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 KATNBL1Q9H079 304 aa17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 FBXO40Q9UH90 709 aa17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 EXOC6BQ9Y2D4 811 aa17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 PCDHA11Q9Y5I1 949 aa17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 PRRC2BQ5JSZ5 2229 aaKnown RBP17.13■□□□□ 0.33
PRPF40A-211ENST00000493468 CYP2D7A0A087X1C5 515 aa17.12■□□□□ 0.33
PRPF40A-211ENST00000493468 USP17L12C9JPN9 530 aa17.12■□□□□ 0.33
PRPF40A-211ENST00000493468 USP17L21D6R901 530 aa17.12■□□□□ 0.33
PRPF40A-211ENST00000493468 ADD2P35612 726 aa17.12■□□□□ 0.33
PRPF40A-211ENST00000493468 PPP2R2DQ66LE6 453 aa17.12■□□□□ 0.33
PRPF40A-211ENST00000493468 DDRGK1Q96HY6 314 aa17.12■□□□□ 0.33
PRPF40A-211ENST00000493468 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.12■□□□□ 0.33
PRPF40A-211ENST00000493468 HCN4Q9Y3Q4 1203 aa17.12■□□□□ 0.33
PRPF40A-211ENST00000493468 SMIM22K7EJ46 135 aa17.11■□□□□ 0.33
PRPF40A-211ENST00000493468 RAD21O60216 631 aa17.11■□□□□ 0.33
PRPF40A-211ENST00000493468 OAZ1P54368 228 aa17.11■□□□□ 0.33
PRPF40A-211ENST00000493468 OTOP2Q7RTS6 562 aa17.11■□□□□ 0.33
PRPF40A-211ENST00000493468 CHST13Q8NET6 341 aa17.11■□□□□ 0.33
PRPF40A-211ENST00000493468 RHPN1Q8TCX5 695 aa17.11■□□□□ 0.33
PRPF40A-211ENST00000493468 DNAJC2Q99543 621 aaKnown RBP17.11■□□□□ 0.33
PRPF40A-211ENST00000493468 NOC4LQ9BVI4 516 aaKnown RBP17.11■□□□□ 0.33
PRPF40A-211ENST00000493468 NYAP2Q9P242 653 aa17.11■□□□□ 0.33
PRPF40A-211ENST00000493468 SLC4A7Q9Y6M7 1214 aa17.11■□□□□ 0.33
PRPF40A-211ENST00000493468 PIEZO1Q92508 2521 aa17.1■□□□□ 0.33
PRPF40A-211ENST00000493468 ZBED4O75132 1171 aa17.1■□□□□ 0.33
PRPF40A-211ENST00000493468 TFF2Q03403 129 aa17.1■□□□□ 0.33
PRPF40A-211ENST00000493468 ITPRIPQ8IWB1 547 aa17.1■□□□□ 0.33
PRPF40A-211ENST00000493468 FTSJ3Q8IY81 847 aaKnown RBP17.1■□□□□ 0.33
PRPF40A-211ENST00000493468 RPUSD2Q8IZ73 545 aaKnown RBP17.1■□□□□ 0.33
PRPF40A-211ENST00000493468 ANKRD35Q8N283 1001 aa17.1■□□□□ 0.33
PRPF40A-211ENST00000493468 NUP88Q99567 741 aaPredicted RBP17.1■□□□□ 0.33
PRPF40A-211ENST00000493468 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.1■□□□□ 0.333e-7■□□□□ 10.5
PRPF40A-211ENST00000493468 SLC38A10Q9HBR0 1119 aa17.1■□□□□ 0.33
PRPF40A-211ENST00000493468 IL1RAPL2Q9NP60 686 aa17.1■□□□□ 0.33
PRPF40A-211ENST00000493468 UMODL1Q5DID0 1318 aa17.1■□□□□ 0.33
PRPF40A-211ENST00000493468 F5H6K3 240 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 NDUFB10O96000 172 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 PFKMP08237 780 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 KCNQ1P51787 676 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 KLRC3Q07444 240 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 ITGA7Q13683 1181 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 CTR9Q6PD62 1173 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 CXCL17Q6UXB2 119 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 CCDC144CPQ8IYA2 1237 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 CLASRPQ8N2M8 674 aaKnown RBP17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 WNT8AQ9H1J5 351 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 PAG1Q9NWQ8 432 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 ARPP21Q9UBL0 812 aaPredicted RBP17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 SYNPO2Q9UMS6 1093 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 COG5Q9UP83 839 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 GNEQ9Y223 722 aaKnown RBP17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 ASTN1O14525 1302 aa17.09■□□□□ 0.33
PRPF40A-211ENST00000493468 RABGGTBP53611 331 aa17.08■□□□□ 0.32
PRPF40A-211ENST00000493468 BEX3Q00994 111 aa17.08■□□□□ 0.32
PRPF40A-211ENST00000493468 TNFAIP2Q03169 654 aa17.08■□□□□ 0.32
PRPF40A-211ENST00000493468 UBE3CQ15386 1083 aa17.08■□□□□ 0.32
PRPF40A-211ENST00000493468 TLK2Q86UE8 772 aa17.08■□□□□ 0.32
PRPF40A-211ENST00000493468 CPXCR1Q8N123 301 aa17.08■□□□□ 0.32
PRPF40A-211ENST00000493468 MICALL1Q8N3F8 863 aa17.08■□□□□ 0.32
PRPF40A-211ENST00000493468 LRFN3Q9BTN0 628 aa17.08■□□□□ 0.32
PRPF40A-211ENST00000493468 CTDP1Q9Y5B0 961 aaPredicted RBP17.08■□□□□ 0.32
PRPF40A-211ENST00000493468 MTCH2Q9Y6C9 303 aa17.08■□□□□ 0.32
PRPF40A-211ENST00000493468 TANC1Q9C0D5 1861 aa17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 GRIN2DO15399 1336 aa17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 GTPBP6O43824 516 aaPredicted RBP17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 ZEB2O60315 1214 aa17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 FDX1P10109 184 aa17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 ATP2A2P16615 1042 aaKnown RBP17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 RASA1P20936 1047 aa17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 CCL23P55773 120 aa17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 FSCN1Q16658 493 aaKnown RBP17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 FAM133AQ8N9E0 248 aa17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 VWCEQ96DN2 955 aa17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 KIF1BPQ96EK5 621 aa17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 RAVER2Q9HCJ3 691 aaKnown RBP17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 FEM1BQ9UK73 627 aa17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 SLC4A4Q9Y6R1 1079 aa17.07■□□□□ 0.32
PRPF40A-211ENST00000493468 SCN5AQ14524 2016 aa17.06■□□□□ 0.32
PRPF40A-211ENST00000493468 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.06■□□□□ 0.32
PRPF40A-211ENST00000493468 ASB14A6NK59 587 aa17.06■□□□□ 0.32
PRPF40A-211ENST00000493468 B4GALT4O60513 344 aa17.06■□□□□ 0.32
PRPF40A-211ENST00000493468 IFIT2P09913 472 aaKnown RBP17.06■□□□□ 0.32
PRPF40A-211ENST00000493468 RLBP1P12271 317 aa17.06■□□□□ 0.32
PRPF40A-211ENST00000493468 MYOGP15173 224 aa17.06■□□□□ 0.32
PRPF40A-211ENST00000493468 SLFNL1Q499Z3 407 aa17.06■□□□□ 0.32
PRPF40A-211ENST00000493468 SBK1Q52WX2 424 aa17.06■□□□□ 0.32
PRPF40A-211ENST00000493468 TMEM31Q5JXX7 168 aa17.06■□□□□ 0.32
PRPF40A-211ENST00000493468 AGBL1Q96MI9 1066 aa17.06■□□□□ 0.32
PRPF40A-211ENST00000493468 Q9Y3F1 56 aa17.06■□□□□ 0.32
PRPF40A-211ENST00000493468 LCTP09848 1927 aa17.06■□□□□ 0.32
PRPF40A-211ENST00000493468 IGKV6D-41A0A0C4DH26 115 aa17.05■□□□□ 0.32
PRPF40A-211ENST00000493468 SLC4A3P48751 1232 aa17.05■□□□□ 0.32
PRPF40A-211ENST00000493468 SKIV2LQ15477 1246 aaKnown RBP17.05■□□□□ 0.32
PRPF40A-211ENST00000493468 TMEM67Q5HYA8 995 aa17.05■□□□□ 0.32
PRPF40A-211ENST00000493468 MKL1Q969V6 931 aa17.05■□□□□ 0.32
PRPF40A-211ENST00000493468 KIFC2Q96AC6 838 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms