RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 SLC4A3P48751 1232 aa19.94■□□□□ 0.78
LIME1-208ENST00000493265 ST3GAL1Q11201 340 aa19.94■□□□□ 0.78
LIME1-208ENST00000493265 PPP2R5BQ15173 497 aa19.94■□□□□ 0.78
LIME1-208ENST00000493265 TAF1CQ15572 869 aaPredicted RBP19.94■□□□□ 0.78
LIME1-208ENST00000493265 SLC35G1Q2M3R5 365 aa19.94■□□□□ 0.78
LIME1-208ENST00000493265 CCDC174Q6PII3 467 aa19.94■□□□□ 0.78
LIME1-208ENST00000493265 CPLX2Q6PUV4 134 aaKnown RBP19.94■□□□□ 0.78
LIME1-208ENST00000493265 BTNL9Q6UXG8 535 aa19.94■□□□□ 0.78
LIME1-208ENST00000493265 PAGR1Q9BTK6 254 aa19.94■□□□□ 0.78
LIME1-208ENST00000493265 FOXD4L1Q9NU39 408 aa19.94■□□□□ 0.78
LIME1-208ENST00000493265 HOXC10Q9NYD6 342 aa19.94■□□□□ 0.78
LIME1-208ENST00000493265 ZSWIM8A7E2V4 1837 aa19.93■□□□□ 0.78
LIME1-208ENST00000493265 SPDYE16A6NNV3 312 aaPredicted RBP19.93■□□□□ 0.78
LIME1-208ENST00000493265 CYTH3O43739 400 aa19.93■□□□□ 0.78
LIME1-208ENST00000493265 PEX10O60683 326 aa19.93■□□□□ 0.78
LIME1-208ENST00000493265 ANP32AP39687 249 aaKnown RBP19.93■□□□□ 0.78
LIME1-208ENST00000493265 HERVK_113P62684 666 aa19.93■□□□□ 0.78
LIME1-208ENST00000493265 PIGSQ96S52 555 aa19.93■□□□□ 0.78
LIME1-208ENST00000493265 PARK7Q99497 189 aaKnown RBP19.93■□□□□ 0.78
LIME1-208ENST00000493265 SLC26A6Q9BXS9 759 aa19.93■□□□□ 0.78
LIME1-208ENST00000493265 JMJD4Q9H9V9 463 aa19.93■□□□□ 0.78
LIME1-208ENST00000493265 SLC45A1Q9Y2W3 748 aa19.93■□□□□ 0.78
LIME1-208ENST00000493265 RBM19Q9Y4C8 960 aaKnown RBP19.93■□□□□ 0.78
LIME1-208ENST00000493265 MKI67P46013 3256 aaKnown RBP19.93■□□□□ 0.78
LIME1-208ENST00000493265 PLA2G6O60733 806 aa19.92■□□□□ 0.78
LIME1-208ENST00000493265 ZBED4O75132 1171 aa19.92■□□□□ 0.78
LIME1-208ENST00000493265 PLS1Q14651 629 aa19.92■□□□□ 0.78
LIME1-208ENST00000493265 CPXCR1Q8N123 301 aa19.92■□□□□ 0.78
LIME1-208ENST00000493265 RRP36Q96EU6 259 aaKnown RBP19.92■□□□□ 0.78
LIME1-208ENST00000493265 DDX11Q96FC9 970 aa19.92■□□□□ 0.78
LIME1-208ENST00000493265 SPZ1Q9BXG8 430 aa19.92■□□□□ 0.78
LIME1-208ENST00000493265 V9GY48 417 aaPredicted RBP19.92■□□□□ 0.78
LIME1-208ENST00000493265 CNTNAP5Q8WYK1 1306 aa19.92■□□□□ 0.78
LIME1-208ENST00000493265 VWA5AO00534 786 aa19.91■□□□□ 0.78
LIME1-208ENST00000493265 JAK2O60674 1132 aa19.91■□□□□ 0.78
LIME1-208ENST00000493265 CDKL5O76039 1030 aa19.91■□□□□ 0.78
LIME1-208ENST00000493265 CTDNEP1O95476 244 aa19.91■□□□□ 0.78
LIME1-208ENST00000493265 EN2P19622 333 aaPredicted RBP19.91■□□□□ 0.78
LIME1-208ENST00000493265 AKAP17AQ02040 695 aaKnown RBP19.91■□□□□ 0.78
LIME1-208ENST00000493265 SSRP1Q08945 709 aaKnown RBP19.91■□□□□ 0.78
LIME1-208ENST00000493265 FUT2Q10981 343 aa19.91■□□□□ 0.78
LIME1-208ENST00000493265 BECN1Q14457 450 aa19.91■□□□□ 0.78
LIME1-208ENST00000493265 NTRK3Q16288 839 aa19.91■□□□□ 0.78
LIME1-208ENST00000493265 CDC37Q16543 378 aaPredicted RBP19.91■□□□□ 0.78
LIME1-208ENST00000493265 SPRYD3Q8NCJ5 442 aa19.91■□□□□ 0.78
LIME1-208ENST00000493265 ARMC5Q96C12 935 aa19.91■□□□□ 0.78
LIME1-208ENST00000493265 RIOX1Q9H6W3 641 aa19.91■□□□□ 0.78
LIME1-208ENST00000493265 RAVER2Q9HCJ3 691 aaKnown RBP19.91■□□□□ 0.78
LIME1-208ENST00000493265 SEC63Q9UGP8 760 aaKnown RBP19.91■□□□□ 0.78
LIME1-208ENST00000493265 PARP14Q460N5 1801 aa19.9■□□□□ 0.78
LIME1-208ENST00000493265 BRCA2P51587 3418 aa19.9■□□□□ 0.78
LIME1-208ENST00000493265 PTPDC1A2A3K4 754 aa19.9■□□□□ 0.78
LIME1-208ENST00000493265 IFNAR1P17181 557 aa19.9■□□□□ 0.78
LIME1-208ENST00000493265 TAL1P17542 331 aaPredicted RBP19.9■□□□□ 0.78
LIME1-208ENST00000493265 QRICH1Q2TAL8 776 aa19.9■□□□□ 0.78
LIME1-208ENST00000493265 TRIM22Q8IYM9 498 aa19.9■□□□□ 0.78
LIME1-208ENST00000493265 NSUN7Q8NE18 718 aaKnown RBP19.9■□□□□ 0.78
LIME1-208ENST00000493265 ZFYVE28Q9HCC9 887 aa19.9■□□□□ 0.78
LIME1-208ENST00000493265 CPA4Q9UI42 421 aa19.9■□□□□ 0.78
LIME1-208ENST00000493265 RLFQ13129 1914 aa19.9■□□□□ 0.78
LIME1-208ENST00000493265 HSP90AA1P07900 732 aaKnown RBP19.89■□□□□ 0.77
LIME1-208ENST00000493265 MYPNQ86TC9 1320 aa19.89■□□□□ 0.77
LIME1-208ENST00000493265 ANKRD13CQ8N6S4 541 aa19.89■□□□□ 0.77
LIME1-208ENST00000493265 RANBP17Q9H2T7 1088 aaKnown RBP19.89■□□□□ 0.77
LIME1-208ENST00000493265 SLC38A10Q9HBR0 1119 aa19.89■□□□□ 0.77
LIME1-208ENST00000493265 ZCCHC17Q9NP64 241 aaKnown RBP19.89■□□□□ 0.77
LIME1-208ENST00000493265 BTBD7Q9P203 1132 aa19.89■□□□□ 0.77
LIME1-208ENST00000493265 ZBTB5O15062 677 aa19.88■□□□□ 0.77
LIME1-208ENST00000493265 ECM2O94769 699 aaPredicted RBP19.88■□□□□ 0.77
LIME1-208ENST00000493265 FMNL1O95466 1100 aaPredicted RBP19.88■□□□□ 0.77
LIME1-208ENST00000493265 SMARCA1P28370 1054 aa19.88■□□□□ 0.77
LIME1-208ENST00000493265 FOSBP53539 338 aa19.88■□□□□ 0.77
LIME1-208ENST00000493265 TMEM132BQ14DG7 1078 aa19.88■□□□□ 0.77
LIME1-208ENST00000493265 USH1GQ495M9 461 aa19.88■□□□□ 0.77
LIME1-208ENST00000493265 POTEEQ6S8J3 1075 aa19.88■□□□□ 0.77
LIME1-208ENST00000493265 AGBL1Q96MI9 1066 aa19.88■□□□□ 0.77
LIME1-208ENST00000493265 TXNRD2Q9NNW7 524 aa19.88■□□□□ 0.77
LIME1-208ENST00000493265 ORC3Q9UBD5 711 aaPredicted RBP19.88■□□□□ 0.77
LIME1-208ENST00000493265 RBPJLQ9UBG7 517 aa19.88■□□□□ 0.77
LIME1-208ENST00000493265 PTCH2Q9Y6C5 1203 aa19.88■□□□□ 0.77
LIME1-208ENST00000493265 BAZ2BQ9UIF8 2168 aaKnown RBP19.88■□□□□ 0.77
LIME1-208ENST00000493265 PNMA6FA0A0J9YX94 578 aa19.87■□□□□ 0.77
LIME1-208ENST00000493265 PRPF3O43395 683 aaKnown RBP19.87■□□□□ 0.77
LIME1-208ENST00000493265 CUL4AQ13619 759 aa19.87■□□□□ 0.77
LIME1-208ENST00000493265 SLC9C1Q4G0N8 1177 aa19.87■□□□□ 0.77
LIME1-208ENST00000493265 LBX2Q6XYB7 198 aa19.87■□□□□ 0.77
LIME1-208ENST00000493265 HEATR3Q7Z4Q2 680 aa19.87■□□□□ 0.77
LIME1-208ENST00000493265 FBXO11Q86XK2 927 aa19.87■□□□□ 0.77
LIME1-208ENST00000493265 GPKOWQ92917 476 aaPredicted RBP eCLIP19.87■□□□□ 0.77
LIME1-208ENST00000493265 ZNF333Q96JL9 665 aa19.87■□□□□ 0.77
LIME1-208ENST00000493265 LLPHQ9BRT6 129 aaKnown RBP19.87■□□□□ 0.77
LIME1-208ENST00000493265 TMEM106CQ9BVX2 250 aa19.87■□□□□ 0.77
LIME1-208ENST00000493265 RNF26Q9BY78 433 aaPredicted RBP19.87■□□□□ 0.77
LIME1-208ENST00000493265 CCPG1Q9ULG6 757 aa19.87■□□□□ 0.77
LIME1-208ENST00000493265 ADAMTS5Q9UNA0 930 aa19.87■□□□□ 0.77
LIME1-208ENST00000493265 COL11A1P12107 1806 aaPredicted RBP19.87■□□□□ 0.77
LIME1-208ENST00000493265 PPP1R11O60927 126 aaPredicted RBP19.86■□□□□ 0.77
LIME1-208ENST00000493265 CNMDO75829 334 aa19.86■□□□□ 0.77
LIME1-208ENST00000493265 MYCP01106 439 aaPredicted RBP19.86■□□□□ 0.77
LIME1-208ENST00000493265 FDX1P10109 184 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms