RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 RBM5P52756 815 aaKnown RBP eCLIP23.9■■□□□ 1.42
CCDC88B-208ENST00000492980 REXO1Q8N1G1 1221 aaKnown RBP23.9■■□□□ 1.42
CCDC88B-208ENST00000492980 CCDC17Q96LX7 622 aa23.9■■□□□ 1.42
CCDC88B-208ENST00000492980 PP2D1A8MPX8 630 aa23.89■■□□□ 1.42
CCDC88B-208ENST00000492980 PPP1R3GB7ZBB8 358 aa23.89■■□□□ 1.42
CCDC88B-208ENST00000492980 STAT6P42226 847 aa23.89■■□□□ 1.42
CCDC88B-208ENST00000492980 EN1Q05925 392 aaPredicted RBP23.89■■□□□ 1.42
CCDC88B-208ENST00000492980 TCP10Q12799 353 aa23.89■■□□□ 1.42
CCDC88B-208ENST00000492980 LETM2Q2VYF4 491 aa23.89■■□□□ 1.42
CCDC88B-208ENST00000492980 NEK8Q86SG6 692 aa23.89■■□□□ 1.42
CCDC88B-208ENST00000492980 C16orf45Q96MC5 204 aaPredicted RBP23.89■■□□□ 1.42
CCDC88B-208ENST00000492980 SAMSN1Q9NSI8 373 aaKnown RBP23.89■■□□□ 1.42
CCDC88B-208ENST00000492980 SERPINA10Q9UK55 444 aa23.89■■□□□ 1.42
CCDC88B-208ENST00000492980 SYNRGQ9UMZ2 1314 aa23.89■■□□□ 1.42
CCDC88B-208ENST00000492980 DDTLA6NHG4 134 aaPredicted RBP23.89■■□□□ 1.41
CCDC88B-208ENST00000492980 CCNT1O60563 726 aaKnown RBP23.89■■□□□ 1.41
CCDC88B-208ENST00000492980 TPD52L1Q16890 204 aaPredicted RBP23.89■■□□□ 1.41
CCDC88B-208ENST00000492980 SMYD4Q8IYR2 804 aaPredicted RBP23.89■■□□□ 1.41
CCDC88B-208ENST00000492980 COA7Q96BR5 231 aa23.89■■□□□ 1.41
CCDC88B-208ENST00000492980 CCSER1Q9C0I3 900 aa23.89■■□□□ 1.41
CCDC88B-208ENST00000492980 JMJD4Q9H9V9 463 aa23.89■■□□□ 1.41
CCDC88B-208ENST00000492980 BIN2Q9UBW5 565 aaPredicted RBP23.89■■□□□ 1.41
CCDC88B-208ENST00000492980 USP27XA6NNY8 438 aa23.88■■□□□ 1.41
CCDC88B-208ENST00000492980 OR52Z1P0C646 297 aa23.88■■□□□ 1.41
CCDC88B-208ENST00000492980 CDK11BP21127 795 aaKnown RBP23.88■■□□□ 1.41
CCDC88B-208ENST00000492980 NAALADL2Q58DX5 795 aa23.88■■□□□ 1.41
CCDC88B-208ENST00000492980 SPATA1Q5VX52 437 aa23.88■■□□□ 1.41
CCDC88B-208ENST00000492980 JAKMIP3Q5VZ66 844 aa23.88■■□□□ 1.41
CCDC88B-208ENST00000492980 SH3BP5LQ7L8J4 393 aa23.88■■□□□ 1.41
CCDC88B-208ENST00000492980 TBCKQ8TEA7 893 aa23.88■■□□□ 1.41
CCDC88B-208ENST00000492980 KCND1Q9NSA2 647 aa23.88■■□□□ 1.41
CCDC88B-208ENST00000492980 TMEM260Q9NX78 707 aa23.88■■□□□ 1.41
CCDC88B-208ENST00000492980 NPM3O75607 178 aaKnown RBP23.87■■□□□ 1.41
CCDC88B-208ENST00000492980 PPP4R3BQ5MIZ7 849 aa23.87■■□□□ 1.41
CCDC88B-208ENST00000492980 KLHL10Q6JEL2 608 aa23.87■■□□□ 1.41
CCDC88B-208ENST00000492980 ADGRF4Q8IZF3 695 aa23.87■■□□□ 1.41
CCDC88B-208ENST00000492980 ADCY7P51828 1080 aa23.87■■□□□ 1.41
CCDC88B-208ENST00000492980 ATP2B2Q01814 1243 aa23.87■■□□□ 1.41
CCDC88B-208ENST00000492980 GPATCH4Q5T3I0 446 aaKnown RBP23.87■■□□□ 1.41
CCDC88B-208ENST00000492980 TTBK2Q6IQ55 1244 aa23.87■■□□□ 1.41
CCDC88B-208ENST00000492980 PI4KBQ9UBF8 816 aa23.87■■□□□ 1.41
CCDC88B-208ENST00000492980 PNMA6FA0A0J9YX94 578 aa23.86■■□□□ 1.41
CCDC88B-208ENST00000492980 FAM196BA6NMK8 535 aa23.86■■□□□ 1.41
CCDC88B-208ENST00000492980 UBA7P41226 1012 aa23.86■■□□□ 1.41
CCDC88B-208ENST00000492980 ORC2Q13416 577 aaPredicted RBP23.86■■□□□ 1.41
CCDC88B-208ENST00000492980 RRAGBQ5VZM2 374 aa23.86■■□□□ 1.41
CCDC88B-208ENST00000492980 CC2D2BQ6DHV5 1058 aa23.86■■□□□ 1.41
CCDC88B-208ENST00000492980 RGS17Q9UGC6 210 aaPredicted RBP23.86■■□□□ 1.41
CCDC88B-208ENST00000492980 STX17P56962 302 aa23.86■■□□□ 1.41
CCDC88B-208ENST00000492980 PPP1R18Q6NYC8 613 aa23.86■■□□□ 1.41
CCDC88B-208ENST00000492980 CCAR2Q8N163 923 aaKnown RBP23.86■■□□□ 1.41
CCDC88B-208ENST00000492980 PPP1R11O60927 126 aaPredicted RBP23.85■■□□□ 1.41
CCDC88B-208ENST00000492980 RPN1P04843 607 aaKnown RBP23.85■■□□□ 1.41
CCDC88B-208ENST00000492980 TNNT1P13805 278 aa23.85■■□□□ 1.41
CCDC88B-208ENST00000492980 PTPN21Q16825 1174 aa23.85■■□□□ 1.41
CCDC88B-208ENST00000492980 CCDC96Q2M329 555 aa23.85■■□□□ 1.41
CCDC88B-208ENST00000492980 SUPT20HQ8NEM7 779 aa23.85■■□□□ 1.41
CCDC88B-208ENST00000492980 AK8Q96MA6 479 aa23.85■■□□□ 1.41
CCDC88B-208ENST00000492980 DYNC1I1O14576 645 aa23.84■■□□□ 1.41
CCDC88B-208ENST00000492980 SHROOM1Q2M3G4 852 aaPredicted RBP23.84■■□□□ 1.41
CCDC88B-208ENST00000492980 RMND1Q9NWS8 449 aa23.84■■□□□ 1.41
CCDC88B-208ENST00000492980 PSME4Q14997 1843 aa23.84■■□□□ 1.41
CCDC88B-208ENST00000492980 YDJCA8MPS7 323 aa23.84■■□□□ 1.41
CCDC88B-208ENST00000492980 KCNJ6P48051 423 aa23.84■■□□□ 1.41
CCDC88B-208ENST00000492980 CERKLQ49MI3 558 aaPredicted RBP23.84■■□□□ 1.41
CCDC88B-208ENST00000492980 CDKAL1Q5VV42 579 aa23.84■■□□□ 1.41
CCDC88B-208ENST00000492980 KCTD1Q719H9 257 aa23.84■■□□□ 1.41
CCDC88B-208ENST00000492980 RASSF8Q8NHQ8 419 aa23.84■■□□□ 1.41
CCDC88B-208ENST00000492980 MTMR8Q96EF0 704 aa23.84■■□□□ 1.41
CCDC88B-208ENST00000492980 CTNND2Q9UQB3 1225 aa23.84■■□□□ 1.41
CCDC88B-208ENST00000492980 GTF2F1P35269 517 aaKnown RBP eCLIP23.83■■□□□ 1.41
CCDC88B-208ENST00000492980 SLC16A2P36021 539 aa23.83■■□□□ 1.41
CCDC88B-208ENST00000492980 TBX2Q13207 712 aaPredicted RBP23.83■■□□□ 1.41
CCDC88B-208ENST00000492980 ZNF658Q5TYW1 1059 aaPredicted RBP23.83■■□□□ 1.41
CCDC88B-208ENST00000492980 TATDN1Q6P1N9 297 aa23.83■■□□□ 1.41
CCDC88B-208ENST00000492980 POTEAQ6S8J7 498 aa23.83■■□□□ 1.41
CCDC88B-208ENST00000492980 APTXQ7Z2E3 356 aaKnown RBP23.83■■□□□ 1.41
CCDC88B-208ENST00000492980 ZSCAN29Q8IWY8 852 aaPredicted RBP23.83■■□□□ 1.41
CCDC88B-208ENST00000492980 PPIP5K2O43314 1243 aa23.83■■□□□ 1.4
CCDC88B-208ENST00000492980 EEF2P13639 858 aaKnown RBP23.83■■□□□ 1.4
CCDC88B-208ENST00000492980 NYAP1Q6ZVC0 841 aa23.83■■□□□ 1.4
CCDC88B-208ENST00000492980 LRRC15Q8TF66 581 aa23.83■■□□□ 1.4
CCDC88B-208ENST00000492980 MKL1Q969V6 931 aa23.83■■□□□ 1.4
CCDC88B-208ENST00000492980 RIC8AQ9NPQ8 531 aa23.83■■□□□ 1.4
CCDC88B-208ENST00000492980 NYAP2Q9P242 653 aa23.83■■□□□ 1.4
CCDC88B-208ENST00000492980 A0A1B0GTH6 734 aa23.82■■□□□ 1.4
CCDC88B-208ENST00000492980 USP17L10C9JJH3 530 aa23.82■■□□□ 1.4
CCDC88B-208ENST00000492980 NRDCO43847 1150 aa23.82■■□□□ 1.4
CCDC88B-208ENST00000492980 NR1I3Q14994 352 aa23.82■■□□□ 1.4
CCDC88B-208ENST00000492980 E4F1Q66K89 784 aaPredicted RBP23.82■■□□□ 1.4
CCDC88B-208ENST00000492980 CABP7Q86V35 215 aa23.82■■□□□ 1.4
CCDC88B-208ENST00000492980 POTEDQ86YR6 584 aa23.82■■□□□ 1.4
CCDC88B-208ENST00000492980 KBTBD4Q9NVX7 518 aa23.82■■□□□ 1.4
CCDC88B-208ENST00000492980 TRMT1Q9NXH9 659 aaKnown RBP23.82■■□□□ 1.4
CCDC88B-208ENST00000492980 ZBTB5O15062 677 aa23.81■■□□□ 1.4
CCDC88B-208ENST00000492980 C21orf2O43822 256 aa23.81■■□□□ 1.4
CCDC88B-208ENST00000492980 EDIL3O43854 480 aa23.81■■□□□ 1.4
CCDC88B-208ENST00000492980 CCDC112Q8NEF3 446 aa23.81■■□□□ 1.4
CCDC88B-208ENST00000492980 PLIN2Q99541 437 aa23.81■■□□□ 1.4
CCDC88B-208ENST00000492980 TRIM34Q9BYJ4 488 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms