RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 TRIM17Q9Y577 477 aa4.79□□□□□ -1.64
BRCA1-220ENST00000492859 LRRFIP2Q9Y608 721 aaKnown RBP4.79□□□□□ -1.64
BRCA1-220ENST00000492859 SLC4A7Q9Y6M7 1214 aa4.79□□□□□ -1.64
BRCA1-220ENST00000492859 ABCC9O60706 1549 aa4.79□□□□□ -1.64
BRCA1-220ENST00000492859 TBKBP1A7MCY6 615 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 KIF2AO00139 706 aaPredicted RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 MASP2O00187 686 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 LCE2BO14633 110 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 NDUFB5O43674 189 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 PDE8AO60658 829 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 LGR5O75473 907 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 DKK1O94907 266 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 EYA4O95677 639 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 PAHP00439 452 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 KRT1P04264 644 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 NPR3P17342 541 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 TMOD1P28289 359 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 SOX5P35711 763 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 GTF2A1P52655 376 aaPredicted RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 KIF11P52732 1056 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 AP2B1P63010 937 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 ITKQ08881 620 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 KCNH2Q12809 1159 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 SP140Q13342 867 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 AKAP4Q5JQC9 854 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 CXorf57Q6NSI4 855 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 RETSATQ6NUM9 610 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 BRINP3Q76B58 766 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 ZBTB46Q86UZ6 589 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 MYLK4Q86YV6 388 aaPredicted RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 GALNT13Q8IUC8 556 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 CCDC65Q8IXS2 484 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 RBM12BQ8IXT5 1001 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 NIM1KQ8IY84 436 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 RNF168Q8IYW5 571 aaPredicted RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 CCDC116Q8IYX3 515 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 RDH13Q8NBN7 331 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 HDAC7Q8WUI4 952 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 HLA-CQ95604 372 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 CFAP36Q96G28 342 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 NAF1Q96HR8 494 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 IPO9Q96P70 1041 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 INCENPQ9NQS7 918 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 PAPOLBQ9NRJ5 636 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 HELLSQ9NRZ9 838 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 KRT82Q9NSB4 513 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 ETAA1Q9NY74 926 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 AIPL1Q9NZN9 384 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 SCHIP1Q9P0W5 487 aaPredicted RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 SUFUQ9UMX1 484 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 CNPY2Q9Y2B0 182 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 PCDHGC5Q9Y5F6 944 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 PTCH2Q9Y6C5 1203 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 AK5Q9Y6K8 562 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 SYNJ2BP-COX16A0A087WUM0 186 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 RNF223E7ERA6 249 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 INO80B-WBP1J3KQ70 363 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 EYA2O00167 538 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 TULP2O00295 520 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 AREL1O15033 823 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 PDPK1O15530 556 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 GUCA1CO95843 209 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 S1PR4O95977 384 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 HSPA1AP0DMV8 641 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 HSPA1BP0DMV9 641 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 FDX1P10109 184 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 WEE1P30291 646 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 POLR2BP30876 1174 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 HOXC12P31275 282 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 GJA5P36382 358 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 ATP6V1AP38606 617 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 GJA9P57773 515 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 POLR2FP61218 127 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 FUT2Q10981 343 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 TRAF1Q13077 416 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 LAPTM5Q13571 262 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 SEMA3AQ14563 771 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 ANKRD1Q15327 319 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 MCTP2Q6DN12 878 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 BNC2Q6ZN30 1099 aaPredicted RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 MFSD6Q6ZSS7 791 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 LHFPL2Q6ZUX7 228 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 STRA8Q7Z7C7 330 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 SPATS2Q86XZ4 545 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 EPS8L3Q8TE67 593 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 NSUN6Q8TEA1 469 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 THAP3Q8WTV1 239 aaPredicted RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 SYMPKQ92797 1274 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 HPS3Q969F9 1004 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 CFHR5Q9BXR6 569 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 NIFKQ9BYG3 293 aaKnown RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 TRIM7Q9C029 511 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 LMAN2LQ9H0V9 348 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 TNKS2Q9H2K2 1166 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 FBRSQ9HAH7 460 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 COPRSQ9NQ92 184 aa4.78□□□□□ -1.64
BRCA1-220ENST00000492859 TOPORSQ9NS56 1045 aaPredicted RBP4.78□□□□□ -1.64
BRCA1-220ENST00000492859 ABCF3Q9NUQ8 709 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms