RNA–Protein interactions for RNA: ENST00000492512.1

GPNMB-213, Transcript of glycoprotein nmb, humanhuman

TSL 3

Gene GPNMB, Length 447 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-213ENST00000492512 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.45■□□□□ 0.22
GPNMB-213ENST00000492512 SLC28A3Q9HAS3 691 aa16.45■□□□□ 0.22
GPNMB-213ENST00000492512 IL23AQ9NPF7 189 aa16.45■□□□□ 0.22
GPNMB-213ENST00000492512 F5H6K3 240 aa16.44■□□□□ 0.22
GPNMB-213ENST00000492512 ATP2A1O14983 1001 aa16.44■□□□□ 0.22
GPNMB-213ENST00000492512 FGBP02675 491 aa16.44■□□□□ 0.22
GPNMB-213ENST00000492512 KLRC3Q07444 240 aa16.44■□□□□ 0.22
GPNMB-213ENST00000492512 HERVK_113Q902F9 699 aa16.44■□□□□ 0.22
GPNMB-213ENST00000492512 TSPYL2Q9H2G4 693 aaPredicted RBP16.44■□□□□ 0.22
GPNMB-213ENST00000492512 NKX2-4Q9H2Z4 354 aa16.44■□□□□ 0.22
GPNMB-213ENST00000492512 ZBED9Q6R2W3 1325 aa16.44■□□□□ 0.22
GPNMB-213ENST00000492512 REV3LO60673 3130 aa16.43■□□□□ 0.22
GPNMB-213ENST00000492512 NDUFB10O96000 172 aa16.43■□□□□ 0.22
GPNMB-213ENST00000492512 CD4P01730 458 aa16.43■□□□□ 0.22
GPNMB-213ENST00000492512 UBE3CQ15386 1083 aa16.43■□□□□ 0.22
GPNMB-213ENST00000492512 ARMCX2Q7L311 632 aa16.43■□□□□ 0.22
GPNMB-213ENST00000492512 KIFC2Q96AC6 838 aa16.43■□□□□ 0.22
GPNMB-213ENST00000492512 MKNK2Q9HBH9 465 aa16.43■□□□□ 0.22
GPNMB-213ENST00000492512 RAVER2Q9HCJ3 691 aaKnown RBP16.43■□□□□ 0.22
GPNMB-213ENST00000492512 CXXC1Q9P0U4 656 aaPredicted RBP16.43■□□□□ 0.22
GPNMB-213ENST00000492512 NYAP2Q9P242 653 aa16.43■□□□□ 0.22
GPNMB-213ENST00000492512 ARPP21Q9UBL0 812 aaPredicted RBP16.43■□□□□ 0.22
GPNMB-213ENST00000492512 FBXO40Q9UH90 709 aa16.43■□□□□ 0.22
GPNMB-213ENST00000492512 CHGBP05060 677 aa16.42■□□□□ 0.22
GPNMB-213ENST00000492512 ATP5JP18859 108 aa16.42■□□□□ 0.22
GPNMB-213ENST00000492512 RASA1P20936 1047 aa16.42■□□□□ 0.22
GPNMB-213ENST00000492512 BEX3Q00994 111 aa16.42■□□□□ 0.22
GPNMB-213ENST00000492512 ZSCAN25Q6NSZ9 544 aa16.42■□□□□ 0.22
GPNMB-213ENST00000492512 NOL8Q76FK4 1167 aaKnown RBP16.42■□□□□ 0.22
GPNMB-213ENST00000492512 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.42■□□□□ 0.22
GPNMB-213ENST00000492512 OTOP2Q7RTS6 562 aa16.42■□□□□ 0.22
GPNMB-213ENST00000492512 CCDC144CPQ8IYA2 1237 aa16.42■□□□□ 0.22
GPNMB-213ENST00000492512 STK11IPQ8N1F8 1099 aa16.42■□□□□ 0.22
GPNMB-213ENST00000492512 CHST13Q8NET6 341 aa16.42■□□□□ 0.22
GPNMB-213ENST00000492512 FGD4Q96M96 766 aa16.42■□□□□ 0.22
GPNMB-213ENST00000492512 HAUS7Q99871 368 aa16.42■□□□□ 0.22
GPNMB-213ENST00000492512 HIPK3Q9H422 1215 aa16.42■□□□□ 0.22
GPNMB-213ENST00000492512 YBX2Q9Y2T7 364 aaKnown RBP16.42■□□□□ 0.22
GPNMB-213ENST00000492512 CTAGE5O15320 804 aa16.41■□□□□ 0.22
GPNMB-213ENST00000492512 HMMRO75330 724 aa16.41■□□□□ 0.22
GPNMB-213ENST00000492512 PLA2G5P39877 138 aa16.41■□□□□ 0.22
GPNMB-213ENST00000492512 CXCL17Q6UXB2 119 aa16.41■□□□□ 0.22
GPNMB-213ENST00000492512 PANK1Q8TE04 598 aa16.41■□□□□ 0.22
GPNMB-213ENST00000492512 PUS7LQ9H0K6 701 aaKnown RBP16.41■□□□□ 0.22
GPNMB-213ENST00000492512 SLC38A10Q9HBR0 1119 aa16.41■□□□□ 0.22
GPNMB-213ENST00000492512 CLIP2Q9UDT6 1046 aa16.41■□□□□ 0.22
GPNMB-213ENST00000492512 TRANK1O15050 2925 aa16.41■□□□□ 0.22
GPNMB-213ENST00000492512 RAB11FIP3O75154 756 aa16.4■□□□□ 0.22
GPNMB-213ENST00000492512 CABYRO75952 493 aa16.4■□□□□ 0.22
GPNMB-213ENST00000492512 TNFAIP2Q03169 654 aa16.4■□□□□ 0.22
GPNMB-213ENST00000492512 MICALL1Q8N3F8 863 aa16.4■□□□□ 0.22
GPNMB-213ENST00000492512 SLC43A3Q8NBI5 491 aa16.4■□□□□ 0.22
GPNMB-213ENST00000492512 FAM122AQ96E09 287 aa16.4■□□□□ 0.22
GPNMB-213ENST00000492512 KATNBL1Q9H079 304 aa16.4■□□□□ 0.22
GPNMB-213ENST00000492512 HOMER2Q9NSB8 354 aa16.4■□□□□ 0.22
GPNMB-213ENST00000492512 FEM1BQ9UK73 627 aa16.4■□□□□ 0.22
GPNMB-213ENST00000492512 XIRP2A4UGR9 3374 aa16.4■□□□□ 0.22
GPNMB-213ENST00000492512 UMODL1Q5DID0 1318 aa16.4■□□□□ 0.22
GPNMB-213ENST00000492512 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.39■□□□□ 0.21
GPNMB-213ENST00000492512 MINDY4BA8MYZ0 360 aa16.39■□□□□ 0.21
GPNMB-213ENST00000492512 OAZ1P54368 228 aa16.39■□□□□ 0.21
GPNMB-213ENST00000492512 CCL23P55773 120 aa16.39■□□□□ 0.21
GPNMB-213ENST00000492512 NKX3-2P78367 333 aa16.39■□□□□ 0.21
GPNMB-213ENST00000492512 CNTN2Q02246 1040 aa16.39■□□□□ 0.21
GPNMB-213ENST00000492512 ITGA7Q13683 1181 aa16.39■□□□□ 0.21
GPNMB-213ENST00000492512 SBK1Q52WX2 424 aa16.39■□□□□ 0.21
GPNMB-213ENST00000492512 PPP2R2DQ66LE6 453 aa16.39■□□□□ 0.21
GPNMB-213ENST00000492512 RPAP2Q8IXW5 612 aaPredicted RBP16.39■□□□□ 0.21
GPNMB-213ENST00000492512 SLC4A7Q9Y6M7 1214 aa16.39■□□□□ 0.21
GPNMB-213ENST00000492512 PRRC2BQ5JSZ5 2229 aaKnown RBP16.39■□□□□ 0.21
GPNMB-213ENST00000492512 RABGGTBP53611 331 aa16.38■□□□□ 0.21
GPNMB-213ENST00000492512 FSCN1Q16658 493 aaKnown RBP16.38■□□□□ 0.21
GPNMB-213ENST00000492512 AAK1Q2M2I8 961 aa16.38■□□□□ 0.21
GPNMB-213ENST00000492512 TLK2Q86UE8 772 aa16.38■□□□□ 0.21
GPNMB-213ENST00000492512 RPUSD2Q8IZ73 545 aaKnown RBP16.38■□□□□ 0.21
GPNMB-213ENST00000492512 NOC4LQ9BVI4 516 aaKnown RBP16.38■□□□□ 0.21
GPNMB-213ENST00000492512 SEZ6LQ9BYH1 1024 aa16.38■□□□□ 0.21
GPNMB-213ENST00000492512 AP5M1Q9H0R1 490 aa16.38■□□□□ 0.21
GPNMB-213ENST00000492512 ACAD9Q9H845 621 aa16.38■□□□□ 0.21
GPNMB-213ENST00000492512 ASTN1O14525 1302 aa16.38■□□□□ 0.21
GPNMB-213ENST00000492512 ASB14A6NK59 587 aa16.37■□□□□ 0.21
GPNMB-213ENST00000492512 ZBBXA8MT70 800 aa16.37■□□□□ 0.21
GPNMB-213ENST00000492512 ZEB2O60315 1214 aa16.37■□□□□ 0.21
GPNMB-213ENST00000492512 FDX1P10109 184 aa16.37■□□□□ 0.21
GPNMB-213ENST00000492512 GIMAP6Q6P9H5 292 aa16.37■□□□□ 0.21
GPNMB-213ENST00000492512 ZNF444Q8N0Y2 327 aaPredicted RBP16.37■□□□□ 0.21
GPNMB-213ENST00000492512 FAM133AQ8N9E0 248 aa16.37■□□□□ 0.21
GPNMB-213ENST00000492512 NECAB3Q96P71 396 aaPredicted RBP16.37■□□□□ 0.21
GPNMB-213ENST00000492512 STRBPQ96SI9 672 aaKnown RBP16.37■□□□□ 0.21
GPNMB-213ENST00000492512 C1QTNF1Q9BXJ1 281 aa16.37■□□□□ 0.21
GPNMB-213ENST00000492512 TRPV6Q9H1D0 765 aa16.37■□□□□ 0.21
GPNMB-213ENST00000492512 ISY1Q9ULR0 285 aaKnown RBP16.37■□□□□ 0.21
GPNMB-213ENST00000492512 COG6Q9Y2V7 657 aa16.37■□□□□ 0.21
GPNMB-213ENST00000492512 PCDHA11Q9Y5I1 949 aa16.37■□□□□ 0.21
GPNMB-213ENST00000492512 IGKV6D-41A0A0C4DH26 115 aa16.36■□□□□ 0.21
GPNMB-213ENST00000492512 GSG1L2A8MUP6 293 aa16.36■□□□□ 0.21
GPNMB-213ENST00000492512 DYNC1LI2O43237 492 aaPredicted RBP16.36■□□□□ 0.21
GPNMB-213ENST00000492512 B4GALT4O60513 344 aa16.36■□□□□ 0.21
GPNMB-213ENST00000492512 BMP1P13497 986 aa16.36■□□□□ 0.21
GPNMB-213ENST00000492512 TFF2Q03403 129 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms