RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 TOMM22Q9NS69 142 aa16.15■□□□□ 0.18
COL6A3-211ENST00000491233 RNF146Q9NTX7 359 aa16.15■□□□□ 0.18
COL6A3-211ENST00000491233 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.15■□□□□ 0.18
COL6A3-211ENST00000491233 FAM184BQ9ULE4 1060 aa16.15■□□□□ 0.18
COL6A3-211ENST00000491233 MTMR7Q9Y216 660 aa16.15■□□□□ 0.18
COL6A3-211ENST00000491233 ZNF536O15090 1300 aa16.15■□□□□ 0.18
COL6A3-211ENST00000491233 DNAH12Q6ZR08 3092 aa16.14■□□□□ 0.17
COL6A3-211ENST00000491233 A0A1W2PQ45 241 aaPredicted RBP16.14■□□□□ 0.17
COL6A3-211ENST00000491233 A0A1W2PQY0 241 aa16.14■□□□□ 0.17
COL6A3-211ENST00000491233 TRIM6-TRIM34B2RNG4 842 aa16.14■□□□□ 0.17
COL6A3-211ENST00000491233 TLE2Q04725 743 aa16.14■□□□□ 0.17
COL6A3-211ENST00000491233 AAMPQ13685 434 aa16.14■□□□□ 0.17
COL6A3-211ENST00000491233 MCMDC2Q4G0Z9 681 aa16.14■□□□□ 0.17
COL6A3-211ENST00000491233 RRP12Q5JTH9 1297 aaKnown RBP16.14■□□□□ 0.17
COL6A3-211ENST00000491233 B4GALNT3Q6L9W6 998 aa16.14■□□□□ 0.17
COL6A3-211ENST00000491233 ARMCX2Q7L311 632 aa16.14■□□□□ 0.17
COL6A3-211ENST00000491233 ZNF589Q86UQ0 364 aaPredicted RBP16.14■□□□□ 0.17
COL6A3-211ENST00000491233 SMC5Q8IY18 1101 aa16.14■□□□□ 0.17
COL6A3-211ENST00000491233 AGBL1Q96MI9 1066 aa16.14■□□□□ 0.17
COL6A3-211ENST00000491233 ZMYM6O95789 1325 aa16.14■□□□□ 0.17
COL6A3-211ENST00000491233 CCDC171Q6TFL3 1326 aa16.14■□□□□ 0.17
COL6A3-211ENST00000491233 PLA2G6O60733 806 aa16.13■□□□□ 0.17
COL6A3-211ENST00000491233 FGAP02671 866 aa16.13■□□□□ 0.17
COL6A3-211ENST00000491233 FGRP09769 529 aa16.13■□□□□ 0.17
COL6A3-211ENST00000491233 SNAP25P60880 206 aa16.13■□□□□ 0.17
COL6A3-211ENST00000491233 ACVR2BQ13705 512 aa16.13■□□□□ 0.17
COL6A3-211ENST00000491233 CCDC96Q2M329 555 aa16.13■□□□□ 0.17
COL6A3-211ENST00000491233 RCSD1Q6JBY9 416 aa16.13■□□□□ 0.17
COL6A3-211ENST00000491233 CCDC174Q6PII3 467 aa16.13■□□□□ 0.17
COL6A3-211ENST00000491233 SH3RF1Q7Z6J0 888 aa16.13■□□□□ 0.17
COL6A3-211ENST00000491233 DEFB123Q8N688 67 aa16.13■□□□□ 0.17
COL6A3-211ENST00000491233 RILPL2Q969X0 211 aa16.13■□□□□ 0.17
COL6A3-211ENST00000491233 A1CFQ9NQ94 594 aaKnown RBP16.13■□□□□ 0.17
COL6A3-211ENST00000491233 PRR12Q9ULL5 1215 aa16.13■□□□□ 0.17
COL6A3-211ENST00000491233 LAMA3Q16787 3333 aa16.13■□□□□ 0.17
COL6A3-211ENST00000491233 TRIM43BA6NCK2 446 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 MYADML2A6NDP7 307 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 POTEB2H3BUK9 544 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 ADCY6O43306 1168 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 DUSP11O75319 330 aaKnown RBP16.12■□□□□ 0.17
COL6A3-211ENST00000491233 HSPD1P10809 573 aaKnown RBP16.12■□□□□ 0.17
COL6A3-211ENST00000491233 ALAS1P13196 640 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 NOVP48745 357 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 ACLYP53396 1101 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 HAND2P61296 217 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 CNTN2Q02246 1040 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 TKFCQ3LXA3 575 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 TICAM2Q86XR7 235 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 CCDC144CPQ8IYA2 1237 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 FAM133AQ8N9E0 248 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 KLHDC9Q8NEP7 349 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 DCAF4Q8WV16 495 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 BADQ92934 168 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 TRIM43Q96BQ3 446 aaPredicted RBP16.12■□□□□ 0.17
COL6A3-211ENST00000491233 TSEN34Q9BSV6 310 aaKnown RBP16.12■□□□□ 0.17
COL6A3-211ENST00000491233 ABHD16BQ9H3Z7 469 aa16.12■□□□□ 0.17
COL6A3-211ENST00000491233 RWDD1Q9H446 243 aaPredicted RBP16.12■□□□□ 0.17
COL6A3-211ENST00000491233 PQBP1O60828 265 aaKnown RBP16.11■□□□□ 0.17
COL6A3-211ENST00000491233 CLTBP09497 229 aa16.11■□□□□ 0.17
COL6A3-211ENST00000491233 IRX5P78411 483 aaPredicted RBP16.11■□□□□ 0.17
COL6A3-211ENST00000491233 CCDC144BQ3MJ40 725 aa16.11■□□□□ 0.17
COL6A3-211ENST00000491233 TRERF1Q96PN7 1200 aa16.11■□□□□ 0.17
COL6A3-211ENST00000491233 KATNBL1Q9H079 304 aa16.11■□□□□ 0.17
COL6A3-211ENST00000491233 STARD7Q9NQZ5 370 aa16.11■□□□□ 0.17
COL6A3-211ENST00000491233 MOXD2PA6NHM9 499 aa16.1■□□□□ 0.17
COL6A3-211ENST00000491233 C6orf222P0C671 652 aaPredicted RBP16.1■□□□□ 0.17
COL6A3-211ENST00000491233 TOP1P11387 765 aaKnown RBP16.1■□□□□ 0.17
COL6A3-211ENST00000491233 CST5P28325 142 aaPredicted RBP16.1■□□□□ 0.17
COL6A3-211ENST00000491233 MUM1L1Q5H9M0 696 aa16.1■□□□□ 0.17
COL6A3-211ENST00000491233 C9orf50Q5SZB4 431 aa16.1■□□□□ 0.17
COL6A3-211ENST00000491233 CCSAPQ6IQ19 270 aaPredicted RBP16.1■□□□□ 0.17
COL6A3-211ENST00000491233 CHD1LQ86WJ1 897 aa16.1■□□□□ 0.17
COL6A3-211ENST00000491233 TBC1D10CQ8IV04 446 aa16.1■□□□□ 0.17
COL6A3-211ENST00000491233 TMEM47Q9BQJ4 181 aa16.1■□□□□ 0.17
COL6A3-211ENST00000491233 CCPG1Q9ULG6 757 aa16.1■□□□□ 0.17
COL6A3-211ENST00000491233 FRMPD2Q68DX3 1309 aaPredicted RBP16.1■□□□□ 0.17
COL6A3-211ENST00000491233 SOWAHBA6NEL2 793 aa16.09■□□□□ 0.17
COL6A3-211ENST00000491233 IGHDP01880 384 aa16.09■□□□□ 0.17
COL6A3-211ENST00000491233 SDSP20132 328 aa16.09■□□□□ 0.17
COL6A3-211ENST00000491233 SLC16A2P36021 539 aa16.09■□□□□ 0.17
COL6A3-211ENST00000491233 SHHQ15465 462 aa16.09■□□□□ 0.17
COL6A3-211ENST00000491233 KCNA10Q16322 511 aa16.09■□□□□ 0.17
COL6A3-211ENST00000491233 TTBK2Q6IQ55 1244 aa16.09■□□□□ 0.17
COL6A3-211ENST00000491233 PLEKHM2Q8IWE5 1019 aa16.09■□□□□ 0.17
COL6A3-211ENST00000491233 EXOC6Q8TAG9 804 aa16.09■□□□□ 0.17
COL6A3-211ENST00000491233 NUP133Q8WUM0 1156 aa16.09■□□□□ 0.17
COL6A3-211ENST00000491233 UPF3AQ9H1J1 476 aaKnown RBP16.09■□□□□ 0.17
COL6A3-211ENST00000491233 RANBP17Q9H2T7 1088 aaKnown RBP16.09■□□□□ 0.17
COL6A3-211ENST00000491233 SPC25Q9HBM1 224 aa16.09■□□□□ 0.17
COL6A3-211ENST00000491233 MTMR10Q9NXD2 777 aa16.09■□□□□ 0.17
COL6A3-211ENST00000491233 ASTN1O14525 1302 aa16.09■□□□□ 0.17
COL6A3-211ENST00000491233 KIAA0355O15063 1070 aa16.08■□□□□ 0.16
COL6A3-211ENST00000491233 ICAM1P05362 532 aa16.08■□□□□ 0.16
COL6A3-211ENST00000491233 ITGB8P26012 769 aa16.08■□□□□ 0.16
COL6A3-211ENST00000491233 GJA9P57773 515 aa16.08■□□□□ 0.16
COL6A3-211ENST00000491233 NUCB1Q02818 461 aa16.08■□□□□ 0.16
COL6A3-211ENST00000491233 AKNAD1Q5T1N1 836 aa16.08■□□□□ 0.16
COL6A3-211ENST00000491233 SYDE2Q5VT97 1194 aa16.08■□□□□ 0.16
COL6A3-211ENST00000491233 NSMFQ6X4W1 530 aa16.08■□□□□ 0.16
COL6A3-211ENST00000491233 PCSK9Q8NBP7 692 aaKnown RBP16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms