RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ACVR2BQ13705 512 aa14.75□□□□□ -0.05
CPSF3-204ENST00000489403 KCNA10Q16322 511 aa14.75□□□□□ -0.05
CPSF3-204ENST00000489403 ZMYM1Q5SVZ6 1142 aa14.75□□□□□ -0.05
CPSF3-204ENST00000489403 ANKRD33Q7Z3H0 272 aa14.75□□□□□ -0.05
CPSF3-204ENST00000489403 CHST13Q8NET6 341 aa14.75□□□□□ -0.05
CPSF3-204ENST00000489403 NUP133Q8WUM0 1156 aa14.75□□□□□ -0.05
CPSF3-204ENST00000489403 FBXO40Q9UH90 709 aa14.75□□□□□ -0.05
CPSF3-204ENST00000489403 TMEM232C9JQI7 657 aa14.74□□□□□ -0.05
CPSF3-204ENST00000489403 FOXP2O15409 715 aa14.74□□□□□ -0.05
CPSF3-204ENST00000489403 STAT2P52630 851 aa14.74□□□□□ -0.05
CPSF3-204ENST00000489403 ARMCX2Q7L311 632 aa14.74□□□□□ -0.05
CPSF3-204ENST00000489403 GMCL1Q96IK5 515 aa14.74□□□□□ -0.05
CPSF3-204ENST00000489403 TOX2Q96NM4 488 aa14.74□□□□□ -0.05
CPSF3-204ENST00000489403 CDX2Q99626 313 aaPredicted RBP14.74□□□□□ -0.05
CPSF3-204ENST00000489403 TTYH1Q9H313 450 aaPredicted RBP14.74□□□□□ -0.05
CPSF3-204ENST00000489403 HOMER2Q9NSB8 354 aa14.74□□□□□ -0.05
CPSF3-204ENST00000489403 TMEM39AQ9NV64 488 aa14.74□□□□□ -0.05
CPSF3-204ENST00000489403 LRRC37A2A6NM11 1700 aa14.74□□□□□ -0.05
CPSF3-204ENST00000489403 ZNF536O15090 1300 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 SALL3Q9BXA9 1300 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 SLC3A2P08195 630 aaKnown RBP14.73□□□□□ -0.05
CPSF3-204ENST00000489403 C6orf222P0C671 652 aaPredicted RBP14.73□□□□□ -0.05
CPSF3-204ENST00000489403 FDX1P10109 184 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 MX1P20591 662 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 CNTN2Q02246 1040 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 FPGSQ05932 587 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 CCDC144BQ3MJ40 725 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 CCDC129Q6ZRS4 1044 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 FAM160B2Q86V87 743 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.73□□□□□ -0.05
CPSF3-204ENST00000489403 CCDC144CPQ8IYA2 1237 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 CHMP4CQ96CF2 233 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 RNPC3Q96LT9 517 aaKnown RBP14.73□□□□□ -0.05
CPSF3-204ENST00000489403 KATNBL1Q9H079 304 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 UPF3AQ9H1J1 476 aaKnown RBP14.73□□□□□ -0.05
CPSF3-204ENST00000489403 SEMA6BQ9H3T3 888 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 ABHD16BQ9H3Z7 469 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 ACAD9Q9H845 621 aa14.73□□□□□ -0.05
CPSF3-204ENST00000489403 ISY1Q9ULR0 285 aaKnown RBP14.73□□□□□ -0.05
CPSF3-204ENST00000489403 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.73□□□□□ -0.05
CPSF3-204ENST00000489403 DCDC2CA8MYV0 355 aa14.72□□□□□ -0.05
CPSF3-204ENST00000489403 ASGR1P07306 291 aa14.72□□□□□ -0.05
CPSF3-204ENST00000489403 SLC1A4P43007 532 aa14.72□□□□□ -0.05
CPSF3-204ENST00000489403 GJA9P57773 515 aa14.72□□□□□ -0.05
CPSF3-204ENST00000489403 CTDSPL2Q05D32 466 aa14.72□□□□□ -0.05
CPSF3-204ENST00000489403 STAG1Q8WVM7 1258 aa14.72□□□□□ -0.05
CPSF3-204ENST00000489403 AGBL1Q96MI9 1066 aa14.72□□□□□ -0.05
CPSF3-204ENST00000489403 GLT1D1Q96MS3 346 aa14.72□□□□□ -0.05
CPSF3-204ENST00000489403 A1CFQ9NQ94 594 aaKnown RBP14.72□□□□□ -0.05
CPSF3-204ENST00000489403 ELP1O95163 1332 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 LCTP09848 1927 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.71□□□□□ -0.05
CPSF3-204ENST00000489403 TSPY2A6NKD2 308 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 MCCP23508 829 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 CDK7P50613 346 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 IKQ13123 557 aaPredicted RBP14.71□□□□□ -0.05
CPSF3-204ENST00000489403 RASGRP2Q7LDG7 609 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 FAM133AQ8N9E0 248 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 PCSK9Q8NBP7 692 aaKnown RBP14.71□□□□□ -0.05
CPSF3-204ENST00000489403 CHURC1Q8WUH1 139 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 MYLIPQ8WY64 445 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 SPC25Q9HBM1 224 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 INCENPQ9NQS7 918 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 IL17RBQ9NRM6 502 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 RNF146Q9NTX7 359 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 TBX21Q9UL17 535 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 STX8Q9UNK0 236 aa14.71□□□□□ -0.05
CPSF3-204ENST00000489403 MROH7Q68CQ1 1323 aa14.7□□□□□ -0.06
CPSF3-204ENST00000489403 SOWAHBA6NEL2 793 aa14.7□□□□□ -0.06
CPSF3-204ENST00000489403 CTAGE5O15320 804 aa14.7□□□□□ -0.06
CPSF3-204ENST00000489403 NMT2O60551 498 aa14.7□□□□□ -0.06
CPSF3-204ENST00000489403 PLA2G6O60733 806 aa14.7□□□□□ -0.06
CPSF3-204ENST00000489403 TIMP1P01033 207 aa14.7□□□□□ -0.06
CPSF3-204ENST00000489403 NKX3-2P78367 333 aa14.7□□□□□ -0.06
CPSF3-204ENST00000489403 PPP4R3BQ5MIZ7 849 aa14.7□□□□□ -0.06
CPSF3-204ENST00000489403 VPS53Q5VIR6 699 aa14.7□□□□□ -0.06
CPSF3-204ENST00000489403 KCTD1Q719H9 257 aa14.7□□□□□ -0.06
CPSF3-204ENST00000489403 COL25A1Q9BXS0 654 aaPredicted RBP14.7□□□□□ -0.06
CPSF3-204ENST00000489403 ASTN1O14525 1302 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 PRUNE2Q8WUY3 3088 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 TMEM265A0A087WTH1 108 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 A0A0U1RQG5 324 aaPredicted RBP14.69□□□□□ -0.06
CPSF3-204ENST00000489403 ARVCFO00192 962 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 ALAS1P13196 640 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 NOVP48745 357 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 SNAP25P60880 206 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 TKFCQ3LXA3 575 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 GNASQ5JWF2 1037 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 RCSD1Q6JBY9 416 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 CCDC174Q6PII3 467 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 FAM126BQ8IXS8 530 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 MAFAQ8NHW3 353 aaPredicted RBP14.69□□□□□ -0.06
CPSF3-204ENST00000489403 TRERF1Q96PN7 1200 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 ANAPC4Q9UJX5 808 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 PRR12Q9ULL5 1215 aa14.69□□□□□ -0.06
CPSF3-204ENST00000489403 RRP1P56182 461 aaKnown RBP14.68□□□□□ -0.06
CPSF3-204ENST00000489403 BEX3Q00994 111 aa14.68□□□□□ -0.06
CPSF3-204ENST00000489403 TNFAIP2Q03169 654 aa14.68□□□□□ -0.06
CPSF3-204ENST00000489403 MUM1L1Q5H9M0 696 aa14.68□□□□□ -0.06
CPSF3-204ENST00000489403 MFSD5Q6N075 450 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms