RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 KRT2P35908 639 aa12.3□□□□□ -0.44
USP11-209ENST00000488848 NASPP49321 788 aaPredicted RBP12.3□□□□□ -0.44
USP11-209ENST00000488848 CLK2P49760 499 aaKnown RBP12.3□□□□□ -0.44
USP11-209ENST00000488848 HMGCS2P54868 508 aa12.3□□□□□ -0.44
USP11-209ENST00000488848 USP17L24Q0WX57 530 aa12.3□□□□□ -0.44
USP11-209ENST00000488848 ORC2Q13416 577 aaPredicted RBP12.3□□□□□ -0.44
USP11-209ENST00000488848 RILPL1Q5EBL4 403 aa12.3□□□□□ -0.44
USP11-209ENST00000488848 CST9Q5W186 159 aa12.3□□□□□ -0.44
USP11-209ENST00000488848 C2orf69Q8N8R5 385 aa12.3□□□□□ -0.44
USP11-209ENST00000488848 SCAND2PQ9GZW5 306 aaPredicted RBP12.3□□□□□ -0.44
USP11-209ENST00000488848 RPAP3Q9H6T3 665 aaPredicted RBP12.3□□□□□ -0.44
USP11-209ENST00000488848 GPBP1L1Q9HC44 474 aaPredicted RBP12.3□□□□□ -0.44
USP11-209ENST00000488848 RIC8AQ9NPQ8 531 aa12.3□□□□□ -0.44
USP11-209ENST00000488848 GJB4Q9NTQ9 266 aa12.3□□□□□ -0.44
USP11-209ENST00000488848 POLR3EQ9NVU0 708 aa12.3□□□□□ -0.44
USP11-209ENST00000488848 TMOD4Q9NZQ9 345 aa12.3□□□□□ -0.44
USP11-209ENST00000488848 ZNF536O15090 1300 aa12.3□□□□□ -0.44
USP11-209ENST00000488848 TESPA1A2RU30 521 aaPredicted RBP12.29□□□□□ -0.44
USP11-209ENST00000488848 TRIM75PA6NK02 468 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 DDX11L8A8MPP1 907 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 BTBD18B2RXH4 712 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 DTNBO60941 627 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 PPFIA3O75145 1194 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 CELF2O95319 508 aaKnown RBP12.29□□□□□ -0.44
USP11-209ENST00000488848 DSG3P32926 999 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 MCM4P33991 863 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 SLC16A2P36021 539 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 GJA5P36382 358 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 KRT85P78386 507 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 OTUD7BQ6GQQ9 843 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 FASTKD5Q7L8L6 764 aaKnown RBP12.29□□□□□ -0.44
USP11-209ENST00000488848 HEATR3Q7Z4Q2 680 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 BLIDQ8IZY5 108 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 MB21D1Q8N884 522 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 SMC1BQ8NDV3 1235 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 OPTNQ96CV9 577 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 WNK4Q96J92 1243 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 ELP3Q9H9T3 547 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 C6orf50Q9HD87 102 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 ZCCHC17Q9NP64 241 aaKnown RBP12.29□□□□□ -0.44
USP11-209ENST00000488848 MAP3K20Q9NYL2 800 aaKnown RBP12.29□□□□□ -0.44
USP11-209ENST00000488848 RTEL1Q9NZ71 1219 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 PCDH10Q9P2E7 1040 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 CFAP45Q9UL16 551 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 KCNJ14Q9UNX9 436 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 AGTPBP1Q9UPW5 1226 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 ABCB11O95342 1321 aa12.29□□□□□ -0.44
USP11-209ENST00000488848 COL11A1P12107 1806 aaPredicted RBP12.28□□□□□ -0.44
USP11-209ENST00000488848 hCG_1642624A0A1W2PR95 340 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 VWA5AO00534 786 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 OPLAHO14841 1288 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 YEATS4O95619 227 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 NAPAP54920 295 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 FSTL1Q12841 308 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 AP3B2Q13367 1082 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 SNAPC2Q13487 334 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 COG2Q14746 738 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 MOB2Q70IA6 237 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 FERMT3Q86UX7 667 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 FBXO11Q86XK2 927 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 HOMER1Q86YM7 354 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 GTF3C2Q8WUA4 911 aaPredicted RBP12.28□□□□□ -0.44
USP11-209ENST00000488848 GPKOWQ92917 476 aaPredicted RBP eCLIP12.28□□□□□ -0.44
USP11-209ENST00000488848 MS4A4AQ96JQ5 239 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 ZNF396Q96N95 335 aaPredicted RBP12.28□□□□□ -0.44
USP11-209ENST00000488848 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.28□□□□□ -0.44
USP11-209ENST00000488848 FBXO28Q9NVF7 368 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 HOXC10Q9NYD6 342 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 RCOR1Q9UKL0 485 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 MTMR7Q9Y216 660 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 PCDHA1Q9Y5I3 950 aa12.28□□□□□ -0.44
USP11-209ENST00000488848 SMCHD1A6NHR9 2005 aa12.27□□□□□ -0.44
USP11-209ENST00000488848 SPDYE16A6NNV3 312 aaPredicted RBP12.27□□□□□ -0.45
USP11-209ENST00000488848 FLOT1O75955 427 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 TOMM70O94826 608 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 BMP15O95972 392 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 ADCY7P51828 1080 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 GTF2A2P52657 109 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 MRPL12P52815 198 aaKnown RBP12.27□□□□□ -0.45
USP11-209ENST00000488848 NLRP5P59047 1200 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 GUCY1B3Q02153 619 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 DNM1Q05193 864 aaKnown RBP12.27□□□□□ -0.45
USP11-209ENST00000488848 NR5A1Q13285 461 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 PABPC4Q13310 644 aaKnown RBP eCLIP12.27□□□□□ -0.45
USP11-209ENST00000488848 PRKG1Q13976 671 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 TTLL12Q14166 644 aaPredicted RBP12.27□□□□□ -0.45
USP11-209ENST00000488848 CSPP1Q1MSJ5 1256 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 TKFCQ3LXA3 575 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 SPRYD7Q5W111 196 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 GPAT2Q6NUI2 795 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 KRT25Q7Z3Z0 450 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 SAPCD2Q86UD0 394 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 REXO1Q8N1G1 1221 aaKnown RBP12.27□□□□□ -0.45
USP11-209ENST00000488848 OXER1Q8TDS5 423 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 CRYGNQ8WXF5 182 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 CNKSR2Q8WXI2 1034 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 CUL5Q93034 780 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 SLC10A4Q96EP9 437 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 OTUD5Q96G74 571 aa12.27□□□□□ -0.45
USP11-209ENST00000488848 ZNF214Q9UL59 606 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms