RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 NBR1Q14596 966 aa12□□□□□ -0.49
SKA1-204ENST00000488454 COG2Q14746 738 aa12□□□□□ -0.49
SKA1-204ENST00000488454 ASPRV1Q53RT3 343 aa12□□□□□ -0.49
SKA1-204ENST00000488454 KIAA1755Q5JYT7 1200 aa12□□□□□ -0.49
SKA1-204ENST00000488454 KCTD1Q719H9 257 aa12□□□□□ -0.49
SKA1-204ENST00000488454 FAM160B2Q86V87 743 aa12□□□□□ -0.49
SKA1-204ENST00000488454 SMCR8Q8TEV9 937 aaPredicted RBP12□□□□□ -0.49
SKA1-204ENST00000488454 MAP3K14Q99558 947 aa12□□□□□ -0.49
SKA1-204ENST00000488454 NUP88Q99567 741 aaPredicted RBP12□□□□□ -0.49
SKA1-204ENST00000488454 SENP2Q9HC62 589 aa12□□□□□ -0.49
SKA1-204ENST00000488454 ZFYVE28Q9HCC9 887 aa12□□□□□ -0.49
SKA1-204ENST00000488454 GPCPD1Q9NPB8 672 aa12□□□□□ -0.49
SKA1-204ENST00000488454 CCDC196A0A1B0GTZ2 297 aa11.99□□□□□ -0.49
SKA1-204ENST00000488454 GRXCR2A6NFK2 248 aa11.99□□□□□ -0.49
SKA1-204ENST00000488454 TMEM232C9JQI7 657 aa11.99□□□□□ -0.49
SKA1-204ENST00000488454 IGF2BP3O00425 579 aaKnown RBP eCLIP11.99□□□□□ -0.49
SKA1-204ENST00000488454 STAT2P52630 851 aa11.99□□□□□ -0.49
SKA1-204ENST00000488454 AK2P54819 239 aa11.99□□□□□ -0.49
SKA1-204ENST00000488454 ZNF543Q08ER8 600 aa11.99□□□□□ -0.49
SKA1-204ENST00000488454 TAF1CQ15572 869 aaPredicted RBP11.99□□□□□ -0.49
SKA1-204ENST00000488454 PRPF38AQ8NAV1 312 aaKnown RBP11.99□□□□□ -0.49
SKA1-204ENST00000488454 FANCBQ8NB91 859 aa11.99□□□□□ -0.49
SKA1-204ENST00000488454 GTF3C2Q8WUA4 911 aaPredicted RBP11.99□□□□□ -0.49
SKA1-204ENST00000488454 KIFC2Q96AC6 838 aa11.99□□□□□ -0.49
SKA1-204ENST00000488454 KIF2CQ99661 725 aa11.99□□□□□ -0.49
SKA1-204ENST00000488454 AGXT2Q9BYV1 514 aa11.99□□□□□ -0.49
SKA1-204ENST00000488454 ASCC2Q9H1I8 757 aaPredicted RBP11.99□□□□□ -0.49
SKA1-204ENST00000488454 FRMPD2Q68DX3 1309 aaPredicted RBP11.99□□□□□ -0.49
SKA1-204ENST00000488454 ATAD5Q96QE3 1844 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 GOLGA8BA8MQT2 603 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 CA12O43570 354 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 DHX16O60231 1041 aaKnown RBP11.98□□□□□ -0.49
SKA1-204ENST00000488454 ZBED4O75132 1171 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 GOLGA8HP0CJ92 632 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 SNHG28P0DPA3 235 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 METAP2P50579 478 aaKnown RBP eCLIP11.98□□□□□ -0.49
SKA1-204ENST00000488454 TROAPQ12815 778 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 TOB2Q14106 344 aaPredicted RBP11.98□□□□□ -0.49
SKA1-204ENST00000488454 GRM4Q14833 912 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 PPP2R5BQ15173 497 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 APOA5Q6Q788 366 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 MICU3Q86XE3 530 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 CCDC144CPQ8IYA2 1237 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 ZNF274Q96GC6 653 aaPredicted RBP11.98□□□□□ -0.49
SKA1-204ENST00000488454 P2RX7Q99572 595 aaKnown RBP11.98□□□□□ -0.49
SKA1-204ENST00000488454 SLF1Q9BQI6 1058 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 LZTS2Q9BRK4 669 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 MYL10Q9BUA6 226 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 RBM28Q9NW13 759 aaKnown RBP11.98□□□□□ -0.49
SKA1-204ENST00000488454 BRPF3Q9ULD4 1205 aa11.98□□□□□ -0.49
SKA1-204ENST00000488454 MYPNQ86TC9 1320 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 PALM3A6NDB9 673 aaPredicted RBP11.97□□□□□ -0.49
SKA1-204ENST00000488454 GOLGA8AA7E2F4 631 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 KLRF2D3W0D1 207 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 PLA2G6O60733 806 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 TRPA1O75762 1119 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 FDX1P10109 184 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 CYP2C8P10632 490 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 RXRAP19793 462 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 PDIA3P30101 505 aaKnown RBP11.97□□□□□ -0.49
SKA1-204ENST00000488454 SLC16A2P36021 539 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 GCLCP48506 637 aaPredicted RBP11.97□□□□□ -0.49
SKA1-204ENST00000488454 MCM2P49736 904 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 RCAN1P53805 252 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 HERVK_113P62684 666 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 RTN1Q16799 776 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 TTBK2Q6IQ55 1244 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 ADGRD1Q6QNK2 874 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 NOL8Q76FK4 1167 aaKnown RBP11.97□□□□□ -0.49
SKA1-204ENST00000488454 RAB11FIP4Q86YS3 637 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 UBA5Q9GZZ9 404 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 SLKQ9H2G2 1235 aaPredicted RBP11.97□□□□□ -0.49
SKA1-204ENST00000488454 VAT1LQ9HCJ6 419 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 FBXO28Q9NVF7 368 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 RNF186Q9NXI6 227 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 PPP1R9AQ9ULJ8 1098 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 LIMCH1Q9UPQ0 1083 aa11.97□□□□□ -0.49
SKA1-204ENST00000488454 GREB1LQ9C091 1923 aaPredicted RBP11.96□□□□□ -0.49
SKA1-204ENST00000488454 TK2O00142 265 aa11.96□□□□□ -0.49
SKA1-204ENST00000488454 EVCP57679 992 aa11.96□□□□□ -0.49
SKA1-204ENST00000488454 STK3Q13188 491 aa11.96□□□□□ -0.49
SKA1-204ENST00000488454 MMRN1Q13201 1228 aa11.96□□□□□ -0.49
SKA1-204ENST00000488454 CRHR2Q13324 411 aa11.96□□□□□ -0.49
SKA1-204ENST00000488454 SYDE2Q5VT97 1194 aa11.96□□□□□ -0.49
SKA1-204ENST00000488454 CPLX2Q6PUV4 134 aaKnown RBP11.96□□□□□ -0.49
SKA1-204ENST00000488454 BTNL9Q6UXG8 535 aa11.96□□□□□ -0.49
SKA1-204ENST00000488454 MB21D1Q8N884 522 aa11.96□□□□□ -0.49
SKA1-204ENST00000488454 ZSCAN31Q96LW9 406 aaPredicted RBP11.96□□□□□ -0.49
SKA1-204ENST00000488454 SAGE1Q9NXZ1 904 aa11.96□□□□□ -0.49
SKA1-204ENST00000488454 MAD2L2Q9UI95 211 aa11.96□□□□□ -0.49
SKA1-204ENST00000488454 PRR12Q9ULL5 1215 aa11.96□□□□□ -0.49
SKA1-204ENST00000488454 TPCN1Q9ULQ1 816 aa11.96□□□□□ -0.49
SKA1-204ENST00000488454 CPLX1O14810 134 aa11.95□□□□□ -0.5
SKA1-204ENST00000488454 TLR2O60603 784 aa11.95□□□□□ -0.5
SKA1-204ENST00000488454 TBC1D8O95759 1140 aa11.95□□□□□ -0.5
SKA1-204ENST00000488454 SMARCA1P28370 1054 aa11.95□□□□□ -0.5
SKA1-204ENST00000488454 CCT2P78371 535 aaKnown RBP11.95□□□□□ -0.5
SKA1-204ENST00000488454 PLS1Q14651 629 aa11.95□□□□□ -0.5
SKA1-204ENST00000488454 C6orf132Q5T0Z8 1188 aa11.95□□□□□ -0.5
SKA1-204ENST00000488454 RASGRP2Q7LDG7 609 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms