RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 NCAPG2Q86XI2 1143 aa12.87□□□□□ -0.35
UBE4B-210ENST00000488228 ADGRF4Q8IZF3 695 aa12.87□□□□□ -0.35
UBE4B-210ENST00000488228 CMTR1Q8N1G2 835 aaKnown RBP12.87□□□□□ -0.35
UBE4B-210ENST00000488228 TMTC2Q8N394 836 aa12.87□□□□□ -0.35
UBE4B-210ENST00000488228 AGBL1Q96MI9 1066 aa12.87□□□□□ -0.35
UBE4B-210ENST00000488228 CWC22Q9HCG8 908 aaKnown RBP12.87□□□□□ -0.35
UBE4B-210ENST00000488228 HOMER2Q9NSB8 354 aa12.87□□□□□ -0.35
UBE4B-210ENST00000488228 RIPK3Q9Y572 518 aa12.87□□□□□ -0.35
UBE4B-210ENST00000488228 FRMPD3Q5JV73 1810 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 CALM1P0DP23 149 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 CALM2P0DP24 149 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 CALM3P0DP25 149 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 MAPK4P31152 587 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 KIF5BP33176 963 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 STAT3P40763 770 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 PRKCZQ05513 592 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 RTN1Q16799 776 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 SYNE3Q6ZMZ3 975 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 GPR142Q7Z601 462 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 HOMER1Q86YM7 354 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 RIOX2Q8IUF8 465 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 CCAR1Q8IX12 1150 aaKnown RBP12.86□□□□□ -0.35
UBE4B-210ENST00000488228 PIBF1Q8WXW3 757 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 TBC1D32Q96NH3 1257 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 JMJD4Q9H9V9 463 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 VAT1LQ9HCJ6 419 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 CCPG1Q9ULG6 757 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 HPS5Q9UPZ3 1129 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 CNTNAP5Q8WYK1 1306 aa12.86□□□□□ -0.35
UBE4B-210ENST00000488228 ATP2A1O14983 1001 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 CYTH3O43739 400 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 ICAM1P05362 532 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 METAP2P50579 478 aaKnown RBP eCLIP12.85□□□□□ -0.35
UBE4B-210ENST00000488228 NEK4P51957 841 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 OAZ1P54368 228 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 AK2P54819 239 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 QRICH1Q2TAL8 776 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 USH1GQ495M9 461 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 COL13A1Q5TAT6 717 aaPredicted RBP12.85□□□□□ -0.35
UBE4B-210ENST00000488228 TMTC3Q6ZXV5 915 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 PLEKHH3Q7Z736 793 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 FBXL16Q8N461 479 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 SHCBP1Q8NEM2 672 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 MAP3K14Q99558 947 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 RNF146Q9NTX7 359 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 GABRQQ9UN88 632 aa12.85□□□□□ -0.35
UBE4B-210ENST00000488228 PPP1R11O60927 126 aaPredicted RBP12.84□□□□□ -0.35
UBE4B-210ENST00000488228 FDX1P10109 184 aa12.84□□□□□ -0.35
UBE4B-210ENST00000488228 ALAS1P13196 640 aa12.84□□□□□ -0.35
UBE4B-210ENST00000488228 CDC27P30260 824 aa12.84□□□□□ -0.35
UBE4B-210ENST00000488228 SRBD1Q8N5C6 995 aaKnown RBP12.84□□□□□ -0.35
UBE4B-210ENST00000488228 FANCBQ8NB91 859 aa12.84□□□□□ -0.35
UBE4B-210ENST00000488228 COA7Q96BR5 231 aa12.84□□□□□ -0.35
UBE4B-210ENST00000488228 PIGSQ96S52 555 aa12.84□□□□□ -0.35
UBE4B-210ENST00000488228 NCOA5Q9HCD5 579 aaKnown RBP12.84□□□□□ -0.35
UBE4B-210ENST00000488228 SRRDQ9UH36 339 aa12.84□□□□□ -0.35
UBE4B-210ENST00000488228 PTCH2Q9Y6C5 1203 aa12.84□□□□□ -0.35
UBE4B-210ENST00000488228 CENPFP49454 3210 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 hCG_1642624A0A1W2PR95 340 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 LARGE1O95461 756 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 SLC25A27O95847 323 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 PDIA3P30101 505 aaKnown RBP12.83□□□□□ -0.36
UBE4B-210ENST00000488228 FLT3LGP49771 235 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 RCAN1P53805 252 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 EVCP57679 992 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 CCT2P78371 535 aaKnown RBP12.83□□□□□ -0.36
UBE4B-210ENST00000488228 STK3Q13188 491 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 GRB14Q14449 540 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 MUM1L1Q5H9M0 696 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 CCDC82Q8N4S0 544 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 MTMR8Q96EF0 704 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 SPZ1Q9BXG8 430 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 MROH8Q9H579 483 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 RIOX1Q9H6W3 641 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 FAM217BQ9NTX9 383 aaPredicted RBP12.83□□□□□ -0.36
UBE4B-210ENST00000488228 RBM28Q9NW13 759 aaKnown RBP12.83□□□□□ -0.36
UBE4B-210ENST00000488228 TPCN1Q9ULQ1 816 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 IVNS1ABPQ9Y6Y0 642 aa12.83□□□□□ -0.36
UBE4B-210ENST00000488228 NFIBO00712 420 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 ZBTB5O15062 677 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 PPFIA3O75145 1194 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 GNRH1P01148 92 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 PTPREP23469 700 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 ADORA2AP29274 412 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 COPB2P35606 906 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 GNAQP50148 359 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 ARHGEF6Q15052 776 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 MORN1Q5T089 497 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 SOCS4Q8WXH5 440 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 TRERF1Q96PN7 1200 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 MMP19Q99542 508 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 MCOLN1Q9GZU1 580 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 ACAD9Q9H845 621 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 GJD2Q9UKL4 321 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 PTPN22Q9Y2R2 807 aa12.82□□□□□ -0.36
UBE4B-210ENST00000488228 SLC15A5A6NIM6 579 aa12.81□□□□□ -0.36
UBE4B-210ENST00000488228 PGK2P07205 417 aa12.81□□□□□ -0.36
UBE4B-210ENST00000488228 FCER1AP12319 257 aa12.81□□□□□ -0.36
UBE4B-210ENST00000488228 ELNP15502 786 aa12.81□□□□□ -0.36
UBE4B-210ENST00000488228 CYP2B6P20813 491 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms