RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 LRRC47Q8N1G4 583 aaKnown RBP23.22■■□□□ 1.31
SMPDL3A-202ENST00000487215 CHST13Q8NET6 341 aa23.22■■□□□ 1.31
SMPDL3A-202ENST00000487215 A0A0U1RQG5 324 aaPredicted RBP23.21■■□□□ 1.31
SMPDL3A-202ENST00000487215 ARVCFO00192 962 aa23.21■■□□□ 1.31
SMPDL3A-202ENST00000487215 GPAA1O43292 621 aa23.21■■□□□ 1.31
SMPDL3A-202ENST00000487215 TDO2P48775 406 aa23.21■■□□□ 1.31
SMPDL3A-202ENST00000487215 OAZ1P54368 228 aa23.21■■□□□ 1.31
SMPDL3A-202ENST00000487215 TMEM240Q5SV17 173 aa23.21■■□□□ 1.31
SMPDL3A-202ENST00000487215 ZNF444Q8N0Y2 327 aaPredicted RBP23.21■■□□□ 1.31
SMPDL3A-202ENST00000487215 SYMPKQ92797 1274 aaKnown RBP23.21■■□□□ 1.31
SMPDL3A-202ENST00000487215 VTI1AQ96AJ9 217 aa23.21■■□□□ 1.31
SMPDL3A-202ENST00000487215 KATNBL1Q9H079 304 aa23.21■■□□□ 1.31
SMPDL3A-202ENST00000487215 MTMR4Q9NYA4 1195 aa23.21■■□□□ 1.31
SMPDL3A-202ENST00000487215 SYNPO2Q9UMS6 1093 aa23.21■■□□□ 1.31
SMPDL3A-202ENST00000487215 RNF113AO15541 343 aaKnown RBP23.2■■□□□ 1.3
SMPDL3A-202ENST00000487215 CSF2RAP15509 400 aa23.2■■□□□ 1.3
SMPDL3A-202ENST00000487215 GNASQ5JWF2 1037 aa23.2■■□□□ 1.3
SMPDL3A-202ENST00000487215 RASIP1Q5U651 963 aa23.2■■□□□ 1.3
SMPDL3A-202ENST00000487215 FAM126BQ8IXS8 530 aa23.2■■□□□ 1.3
SMPDL3A-202ENST00000487215 CCDC144CPQ8IYA2 1237 aa23.2■■□□□ 1.3
SMPDL3A-202ENST00000487215 GMCL1P1Q8NEA9 526 aa23.2■■□□□ 1.3
SMPDL3A-202ENST00000487215 ZNF287Q9HBT7 754 aa23.2■■□□□ 1.3
SMPDL3A-202ENST00000487215 PRDM6Q9NQX0 595 aa23.2■■□□□ 1.3
SMPDL3A-202ENST00000487215 MYH4Q9Y623 1939 aa23.2■■□□□ 1.3
SMPDL3A-202ENST00000487215 GRXCR1A8MXD5 290 aa23.19■■□□□ 1.3
SMPDL3A-202ENST00000487215 M0R2C6 588 aa23.19■■□□□ 1.3
SMPDL3A-202ENST00000487215 CTAGE5O15320 804 aa23.19■■□□□ 1.3
SMPDL3A-202ENST00000487215 TTLL1O95922 423 aa23.19■■□□□ 1.3
SMPDL3A-202ENST00000487215 PBX2P40425 430 aa23.19■■□□□ 1.3
SMPDL3A-202ENST00000487215 TSHZ3Q63HK5 1081 aa23.19■■□□□ 1.3
SMPDL3A-202ENST00000487215 DIEXFQ68CQ4 756 aaKnown RBP23.19■■□□□ 1.3
SMPDL3A-202ENST00000487215 CCDC174Q6PII3 467 aa23.19■■□□□ 1.3
SMPDL3A-202ENST00000487215 PBX4Q9BYU1 374 aa23.19■■□□□ 1.3
SMPDL3A-202ENST00000487215 PPP1R12CQ9BZL4 782 aa23.19■■□□□ 1.3
SMPDL3A-202ENST00000487215 HOMER2Q9NSB8 354 aa23.19■■□□□ 1.3
SMPDL3A-202ENST00000487215 PLIN4Q96Q06 1357 aa23.18■■□□□ 1.3
SMPDL3A-202ENST00000487215 BMP3P12645 472 aa23.18■■□□□ 1.3
SMPDL3A-202ENST00000487215 GNAT2P19087 354 aa23.18■■□□□ 1.3
SMPDL3A-202ENST00000487215 CNTN2Q02246 1040 aa23.18■■□□□ 1.3
SMPDL3A-202ENST00000487215 SLFN13Q68D06 897 aa23.18■■□□□ 1.3
SMPDL3A-202ENST00000487215 TMEM199Q8N511 208 aa23.18■■□□□ 1.3
SMPDL3A-202ENST00000487215 TLR3O15455 904 aaKnown RBP23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 APPP05067 770 aa23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 ZFYP08048 801 aaPredicted RBP23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 ACRP10323 421 aa23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 NKX3-2P78367 333 aa23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 BEX3Q00994 111 aa23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 TJAP1Q5JTD0 557 aa23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 C20orf194Q5TEA3 1177 aa23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 PSRC1Q6PGN9 363 aaPredicted RBP23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 CCDC129Q6ZRS4 1044 aa23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 ZNF365Q70YC5 407 aa23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 FAM133AQ8N9E0 248 aa23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 ACAD9Q9H845 621 aa23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 MCM3APO60318 1980 aa23.17■■□□□ 1.3
SMPDL3A-202ENST00000487215 ASTN1O14525 1302 aa23.16■■□□□ 1.3
SMPDL3A-202ENST00000487215 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.16■■□□□ 1.3
SMPDL3A-202ENST00000487215 CD4P01730 458 aa23.16■■□□□ 1.3
SMPDL3A-202ENST00000487215 IFNL3Q8IZI9 196 aa23.16■■□□□ 1.3
SMPDL3A-202ENST00000487215 NEDD1Q8NHV4 660 aa23.16■■□□□ 1.3
SMPDL3A-202ENST00000487215 GPATCH3Q96I76 525 aa23.16■■□□□ 1.3
SMPDL3A-202ENST00000487215 A1CFQ9NQ94 594 aaKnown RBP23.16■■□□□ 1.3
SMPDL3A-202ENST00000487215 PATL2C9JE40 543 aaKnown RBP23.15■■□□□ 1.3
SMPDL3A-202ENST00000487215 TMEM232C9JQI7 657 aa23.15■■□□□ 1.3
SMPDL3A-202ENST00000487215 TSPY3P0CV98 308 aa23.15■■□□□ 1.3
SMPDL3A-202ENST00000487215 TSPY8P0CW00 308 aa23.15■■□□□ 1.3
SMPDL3A-202ENST00000487215 FDX1P10109 184 aa23.15■■□□□ 1.3
SMPDL3A-202ENST00000487215 TNFAIP2Q03169 654 aa23.15■■□□□ 1.3
SMPDL3A-202ENST00000487215 RNF146Q9NTX7 359 aa23.15■■□□□ 1.3
SMPDL3A-202ENST00000487215 RCAN3Q9UKA8 241 aa23.15■■□□□ 1.3
SMPDL3A-202ENST00000487215 ISY1Q9ULR0 285 aaKnown RBP23.15■■□□□ 1.3
SMPDL3A-202ENST00000487215 ZNF536O15090 1300 aa23.14■■□□□ 1.3
SMPDL3A-202ENST00000487215 SOWAHBA6NEL2 793 aa23.14■■□□□ 1.29
SMPDL3A-202ENST00000487215 CYP2C18P33260 490 aa23.14■■□□□ 1.29
SMPDL3A-202ENST00000487215 STAT2P52630 851 aa23.14■■□□□ 1.29
SMPDL3A-202ENST00000487215 CXCL17Q6UXB2 119 aa23.14■■□□□ 1.29
SMPDL3A-202ENST00000487215 SLC43A3Q8NBI5 491 aa23.14■■□□□ 1.29
SMPDL3A-202ENST00000487215 AGBL1Q96MI9 1066 aa23.14■■□□□ 1.29
SMPDL3A-202ENST00000487215 GAS2L1Q99501 681 aaPredicted RBP23.14■■□□□ 1.29
SMPDL3A-202ENST00000487215 PRDM12Q9H4Q4 367 aa23.14■■□□□ 1.29
SMPDL3A-202ENST00000487215 TFAP4Q01664 338 aa23.13■■□□□ 1.29
SMPDL3A-202ENST00000487215 NOL8Q76FK4 1167 aaKnown RBP23.13■■□□□ 1.29
SMPDL3A-202ENST00000487215 TLK2Q86UE8 772 aa23.13■■□□□ 1.29
SMPDL3A-202ENST00000487215 GMCL1Q96IK5 515 aa23.13■■□□□ 1.29
SMPDL3A-202ENST00000487215 IL23AQ9NPF7 189 aa23.13■■□□□ 1.29
SMPDL3A-202ENST00000487215 GNEQ9Y223 722 aaKnown RBP23.13■■□□□ 1.29
SMPDL3A-202ENST00000487215 LRRC37A2A6NM11 1700 aa23.12■■□□□ 1.29
SMPDL3A-202ENST00000487215 PTGS1P23219 599 aa23.12■■□□□ 1.29
SMPDL3A-202ENST00000487215 PDE4BQ07343 736 aa23.12■■□□□ 1.29
SMPDL3A-202ENST00000487215 FAM160B2Q86V87 743 aa23.12■■□□□ 1.29
SMPDL3A-202ENST00000487215 STAG1Q8WVM7 1258 aa23.12■■□□□ 1.29
SMPDL3A-202ENST00000487215 PPM1EQ8WY54 764 aa23.12■■□□□ 1.29
SMPDL3A-202ENST00000487215 HERVK_113Q902F9 699 aa23.12■■□□□ 1.29
SMPDL3A-202ENST00000487215 CHMP4CQ96CF2 233 aa23.12■■□□□ 1.29
SMPDL3A-202ENST00000487215 SEC62Q99442 399 aaKnown RBP23.12■■□□□ 1.29
SMPDL3A-202ENST00000487215 NACAP1Q9BZK3 213 aa23.12■■□□□ 1.29
SMPDL3A-202ENST00000487215 DCTPP1Q9H773 170 aa23.12■■□□□ 1.29
SMPDL3A-202ENST00000487215 CXXC1Q9P0U4 656 aaPredicted RBP23.12■■□□□ 1.29
SMPDL3A-202ENST00000487215 UMODL1Q5DID0 1318 aa23.11■■□□□ 1.29
SMPDL3A-202ENST00000487215 ASB14A6NK59 587 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms