RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 CHURC1Q8WUH1 139 aa8.29□□□□□ -1.08
VPS50-218ENST00000485994 STAG1Q8WVM7 1258 aa8.29□□□□□ -1.08
VPS50-218ENST00000485994 DEFB118Q96PH6 123 aa8.29□□□□□ -1.08
VPS50-218ENST00000485994 SLF1Q9BQI6 1058 aa8.29□□□□□ -1.08
VPS50-218ENST00000485994 HTATIP2Q9BUP3 242 aa8.29□□□□□ -1.08
VPS50-218ENST00000485994 SLC38A10Q9HBR0 1119 aa8.29□□□□□ -1.08
VPS50-218ENST00000485994 NRBP1Q9UHY1 535 aa8.29□□□□□ -1.08
VPS50-218ENST00000485994 ZNF236Q9UL36 1845 aa8.29□□□□□ -1.08
VPS50-218ENST00000485994 TSPY2A6NKD2 308 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 ZNF213O14771 459 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 COBLO75128 1261 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 ZBED4O75132 1171 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 BMP3P12645 472 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 TRIM32Q13049 653 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 CCL14Q16627 93 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 FAM47AQ5JRC9 791 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 TTC22Q5TAA0 569 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 SLFN13Q68D06 897 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 BTNL9Q6UXG8 535 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 MFSD6Q6ZSS7 791 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 DPP9Q86TI2 863 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 FAM160B2Q86V87 743 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 DGKHQ86XP1 1220 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 STK11IPQ8N1F8 1099 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 MSL3Q8N5Y2 521 aaKnown RBP8.28□□□□□ -1.08
VPS50-218ENST00000485994 NPLOC4Q8TAT6 608 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 ANKS1AQ92625 1134 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 TEX13BQ9BXU2 312 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 RNF41Q9H4P4 317 aaPredicted RBP8.28□□□□□ -1.08
VPS50-218ENST00000485994 CWC22Q9HCG8 908 aaKnown RBP8.28□□□□□ -1.08
VPS50-218ENST00000485994 DIAPH3Q9NSV4 1193 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 FBXO28Q9NVF7 368 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 CTNNA3Q9UI47 895 aa8.28□□□□□ -1.08
VPS50-218ENST00000485994 DNAJC25-GNG10A0A024R161 153 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 RANBP6O60518 1105 aaKnown RBP8.27□□□□□ -1.09
VPS50-218ENST00000485994 FARP2O94887 1054 aaPredicted RBP8.27□□□□□ -1.09
VPS50-218ENST00000485994 MYCP01106 439 aaPredicted RBP8.27□□□□□ -1.09
VPS50-218ENST00000485994 TOP1P11387 765 aaKnown RBP8.27□□□□□ -1.09
VPS50-218ENST00000485994 SLC1A4P43007 532 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 PLS1Q14651 629 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 ZNF792Q3KQV3 632 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 TKFCQ3LXA3 575 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 WDR78Q5VTH9 848 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 CWC27Q6UX04 472 aaKnown RBP8.27□□□□□ -1.09
VPS50-218ENST00000485994 NECAB2Q7Z6G3 386 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 NCAPG2Q86XI2 1143 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 CHST13Q8NET6 341 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 RUFY2Q8WXA3 655 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 KCTD12Q96CX2 325 aaKnown RBP8.27□□□□□ -1.09
VPS50-218ENST00000485994 MAML3Q96JK9 1138 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 MAF1Q9H063 256 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 NBPF3Q9H094 633 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 INCENPQ9NQS7 918 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 FLRT1Q9NZU1 646 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 FBXO40Q9UH90 709 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 STK24Q9Y6E0 443 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 RAD50Q92878 1312 aa8.27□□□□□ -1.09
VPS50-218ENST00000485994 TMEM232C9JQI7 657 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 HRO43593 1189 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 SNHG28P0DPA3 235 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 CYBAP13498 195 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 GSPT1P15170 499 aaKnown RBP8.26□□□□□ -1.09
VPS50-218ENST00000485994 MCCP23508 829 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 CHMLP26374 656 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 STAT2P52630 851 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 KCTD2Q14681 263 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 MAMDC4Q6UXC1 1216 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 DCAF4Q8WV16 495 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 ESR2Q92731 530 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 MMP19Q99542 508 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 NUP88Q99567 741 aaPredicted RBP8.26□□□□□ -1.09
VPS50-218ENST00000485994 TMEM47Q9BQJ4 181 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 PNMA2Q9UL42 364 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 STX8Q9UNK0 236 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 NR2E3Q9Y5X4 410 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 PLXNA1Q9UIW2 1896 aa8.26□□□□□ -1.09
VPS50-218ENST00000485994 ARHGAP33O14559 1287 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 SEPT4O43236 478 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 RAD21O60216 631 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 NMT2O60551 498 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 COL6A1P12109 1028 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 CCND3P30281 292 aaPredicted RBP8.25□□□□□ -1.09
VPS50-218ENST00000485994 IMMTQ16891 758 aaKnown RBP8.25□□□□□ -1.09
VPS50-218ENST00000485994 TRPV1Q8NER1 839 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 DPF3Q92784 378 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 KIFC2Q96AC6 838 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 PAWRQ96IZ0 340 aaKnown RBP8.25□□□□□ -1.09
VPS50-218ENST00000485994 TINF2Q9BSI4 451 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 KRT23Q9C075 422 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 CNNM2Q9H8M5 875 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 DDX20Q9UHI6 824 aaKnown RBP8.25□□□□□ -1.09
VPS50-218ENST00000485994 RIPK3Q9Y572 518 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 CTDP1Q9Y5B0 961 aaPredicted RBP8.25□□□□□ -1.09
VPS50-218ENST00000485994 ZNF536O15090 1300 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 SYNGAP1Q96PV0 1343 aa8.25□□□□□ -1.09
VPS50-218ENST00000485994 LOC102724159A0A0B4J2E5 919 aa8.24□□□□□ -1.09
VPS50-218ENST00000485994 SGSM2O43147 1006 aa8.24□□□□□ -1.09
VPS50-218ENST00000485994 CYP2C19P33261 490 aa8.24□□□□□ -1.09
VPS50-218ENST00000485994 HAND2P61296 217 aa8.24□□□□□ -1.09
VPS50-218ENST00000485994 PWP2Q15269 919 aaKnown RBP8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms