RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 LAMA4Q16363 1823 aa19.51■□□□□ 0.71
TRIM54-203ENST00000485306 FRMPD3Q5JV73 1810 aa19.51■□□□□ 0.71
TRIM54-203ENST00000485306 C7orf61Q8IZ16 206 aa19.51■□□□□ 0.71
TRIM54-203ENST00000485306 CNPY2Q9Y2B0 182 aa19.51■□□□□ 0.71
TRIM54-203ENST00000485306 PFASO15067 1338 aa19.51■□□□□ 0.71
TRIM54-203ENST00000485306 DNM1LO00429 736 aa19.5■□□□□ 0.71
TRIM54-203ENST00000485306 IMMTQ16891 758 aaKnown RBP19.5■□□□□ 0.71
TRIM54-203ENST00000485306 CCDC96Q2M329 555 aa19.5■□□□□ 0.71
TRIM54-203ENST00000485306 TKFCQ3LXA3 575 aa19.5■□□□□ 0.71
TRIM54-203ENST00000485306 CCDC178Q5BJE1 867 aa19.5■□□□□ 0.71
TRIM54-203ENST00000485306 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.5■□□□□ 0.71
TRIM54-203ENST00000485306 TMEM47Q9BQJ4 181 aa19.5■□□□□ 0.71
TRIM54-203ENST00000485306 SENP6Q9GZR1 1112 aaPredicted RBP19.5■□□□□ 0.71
TRIM54-203ENST00000485306 ALPK3Q96L96 1907 aa19.5■□□□□ 0.71
TRIM54-203ENST00000485306 KBTBD13C9JR72 458 aa19.49■□□□□ 0.71
TRIM54-203ENST00000485306 EPB41L2O43491 1005 aaKnown RBP19.49■□□□□ 0.71
TRIM54-203ENST00000485306 C8orf34Q49A92 452 aa19.49■□□□□ 0.71
TRIM54-203ENST00000485306 KIAA1211Q6ZU35 1233 aa19.49■□□□□ 0.71
TRIM54-203ENST00000485306 ACAD9Q9H845 621 aa19.49■□□□□ 0.71
TRIM54-203ENST00000485306 HOMER2Q9NSB8 354 aa19.49■□□□□ 0.71
TRIM54-203ENST00000485306 PRR12Q9ULL5 1215 aa19.49■□□□□ 0.71
TRIM54-203ENST00000485306 NEDD4P46934 1319 aa19.49■□□□□ 0.71
TRIM54-203ENST00000485306 DNAJC25-GNG10A0A024R161 153 aa19.48■□□□□ 0.71
TRIM54-203ENST00000485306 REC8O95072 547 aa19.48■□□□□ 0.71
TRIM54-203ENST00000485306 MYCNP04198 464 aaPredicted RBP19.48■□□□□ 0.71
TRIM54-203ENST00000485306 RARBP10826 455 aa19.48■□□□□ 0.71
TRIM54-203ENST00000485306 GJC2Q5T442 439 aaPredicted RBP19.48■□□□□ 0.71
TRIM54-203ENST00000485306 ANO1Q5XXA6 986 aa19.48■□□□□ 0.71
TRIM54-203ENST00000485306 ZNF467Q7Z7K2 595 aaPredicted RBP19.48■□□□□ 0.71
TRIM54-203ENST00000485306 IQCA1Q86XH1 822 aa19.48■□□□□ 0.71
TRIM54-203ENST00000485306 AGBL1Q96MI9 1066 aa19.48■□□□□ 0.71
TRIM54-203ENST00000485306 SYNGAP1Q96PV0 1343 aa19.48■□□□□ 0.71
TRIM54-203ENST00000485306 CCDC174Q6PII3 467 aa19.47■□□□□ 0.71
TRIM54-203ENST00000485306 MAMDC4Q6UXC1 1216 aa19.47■□□□□ 0.71
TRIM54-203ENST00000485306 DGKHQ86XP1 1220 aa19.47■□□□□ 0.71
TRIM54-203ENST00000485306 TRERF1Q96PN7 1200 aa19.47■□□□□ 0.71
TRIM54-203ENST00000485306 RNF146Q9NTX7 359 aa19.47■□□□□ 0.71
TRIM54-203ENST00000485306 RBM27Q9P2N5 1060 aaKnown RBP19.47■□□□□ 0.71
TRIM54-203ENST00000485306 SMCHD1A6NHR9 2005 aa19.47■□□□□ 0.71
TRIM54-203ENST00000485306 ALAS1P13196 640 aa19.46■□□□□ 0.71
TRIM54-203ENST00000485306 AKR1A1P14550 325 aa19.46■□□□□ 0.71
TRIM54-203ENST00000485306 PTH1RQ03431 593 aa19.46■□□□□ 0.71
TRIM54-203ENST00000485306 BTNL9Q6UXG8 535 aa19.46■□□□□ 0.71
TRIM54-203ENST00000485306 CNNM2Q9H8M5 875 aa19.46■□□□□ 0.71
TRIM54-203ENST00000485306 XPNPEP3Q9NQH7 507 aa19.46■□□□□ 0.71
TRIM54-203ENST00000485306 FAM184BQ9ULE4 1060 aa19.46■□□□□ 0.71
TRIM54-203ENST00000485306 ZNF536O15090 1300 aa19.46■□□□□ 0.71
TRIM54-203ENST00000485306 POTEB2H3BUK9 544 aa19.45■□□□□ 0.7
TRIM54-203ENST00000485306 KDM4AO75164 1064 aa19.45■□□□□ 0.7
TRIM54-203ENST00000485306 ZNF865P0CJ78 1059 aaPredicted RBP19.45■□□□□ 0.7
TRIM54-203ENST00000485306 LRRC26Q2I0M4 334 aa19.45■□□□□ 0.7
TRIM54-203ENST00000485306 SYDE2Q5VT97 1194 aa19.45■□□□□ 0.7
TRIM54-203ENST00000485306 RNF180Q86T96 592 aa19.45■□□□□ 0.7
TRIM54-203ENST00000485306 KRT23Q9C075 422 aa19.45■□□□□ 0.7
TRIM54-203ENST00000485306 GPCPD1Q9NPB8 672 aa19.45■□□□□ 0.7
TRIM54-203ENST00000485306 PNMA2Q9UL42 364 aa19.45■□□□□ 0.7
TRIM54-203ENST00000485306 CCPG1Q9ULG6 757 aa19.45■□□□□ 0.7
TRIM54-203ENST00000485306 ZMYND8Q9ULU4 1186 aaPredicted RBP19.45■□□□□ 0.7
TRIM54-203ENST00000485306 A0A1W2PPC1 479 aa19.44■□□□□ 0.7
TRIM54-203ENST00000485306 B4E1Z4 1266 aa19.44■□□□□ 0.7
TRIM54-203ENST00000485306 ICAM1P05362 532 aa19.44■□□□□ 0.7
TRIM54-203ENST00000485306 PDHBP11177 359 aa19.44■□□□□ 0.7
TRIM54-203ENST00000485306 TAL1P17542 331 aaPredicted RBP19.44■□□□□ 0.7
TRIM54-203ENST00000485306 SLC16A2P36021 539 aa19.44■□□□□ 0.7
TRIM54-203ENST00000485306 ATN1P54259 1190 aaPredicted RBP19.44■□□□□ 0.7
TRIM54-203ENST00000485306 SNAP25P60880 206 aa19.44■□□□□ 0.7
TRIM54-203ENST00000485306 LRRC41Q15345 812 aa19.44■□□□□ 0.7
TRIM54-203ENST00000485306 TTBK2Q6IQ55 1244 aa19.44■□□□□ 0.7
TRIM54-203ENST00000485306 RASGRP2Q7LDG7 609 aa19.44■□□□□ 0.7
TRIM54-203ENST00000485306 ZKSCAN3Q9BRR0 538 aa19.44■□□□□ 0.7
TRIM54-203ENST00000485306 ABHD16BQ9H3Z7 469 aa19.44■□□□□ 0.7
TRIM54-203ENST00000485306 FRMPD2Q68DX3 1309 aaPredicted RBP19.44■□□□□ 0.7
TRIM54-203ENST00000485306 SNAI1O95863 264 aaPredicted RBP19.43■□□□□ 0.7
TRIM54-203ENST00000485306 SYN1P17600 705 aa19.43■□□□□ 0.7
TRIM54-203ENST00000485306 ACVR2BQ13705 512 aa19.43■□□□□ 0.7
TRIM54-203ENST00000485306 GPATCH4Q5T3I0 446 aaKnown RBP19.43■□□□□ 0.7
TRIM54-203ENST00000485306 ZSCAN10Q96SZ4 725 aaPredicted RBP19.43■□□□□ 0.7
TRIM54-203ENST00000485306 BACH2Q9BYV9 841 aa19.43■□□□□ 0.7
TRIM54-203ENST00000485306 RANBP17Q9H2T7 1088 aaKnown RBP19.43■□□□□ 0.7
TRIM54-203ENST00000485306 PRO3102Q9H379 93 aa19.43■□□□□ 0.7
TRIM54-203ENST00000485306 KAT14Q9H8E8 782 aa19.43■□□□□ 0.7
TRIM54-203ENST00000485306 ANO2Q9NQ90 1003 aa19.43■□□□□ 0.7
TRIM54-203ENST00000485306 A1CFQ9NQ94 594 aaKnown RBP19.43■□□□□ 0.7
TRIM54-203ENST00000485306 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.43■□□□□ 0.7
TRIM54-203ENST00000485306 ZHX1Q9UKY1 873 aaPredicted RBP19.43■□□□□ 0.7
TRIM54-203ENST00000485306 U3KPZ7 1027 aaPredicted RBP19.43■□□□□ 0.7
TRIM54-203ENST00000485306 ASB14A6NK59 587 aa19.42■□□□□ 0.7
TRIM54-203ENST00000485306 FXR1P51114 621 aaKnown RBP eCLIP19.42■□□□□ 0.7
TRIM54-203ENST00000485306 ZNF543Q08ER8 600 aa19.42■□□□□ 0.7
TRIM54-203ENST00000485306 SLC39A5Q6ZMH5 540 aa19.42■□□□□ 0.7
TRIM54-203ENST00000485306 FAM133AQ8N9E0 248 aa19.42■□□□□ 0.7
TRIM54-203ENST00000485306 LSG1Q9H089 658 aaKnown RBP19.42■□□□□ 0.7
TRIM54-203ENST00000485306 ZSWIM5Q9P217 1185 aa19.42■□□□□ 0.7
TRIM54-203ENST00000485306 PRKAG2Q9UGJ0 569 aa19.42■□□□□ 0.7
TRIM54-203ENST00000485306 TRIOBPQ9H2D6 2365 aa19.42■□□□□ 0.7
TRIM54-203ENST00000485306 PGK1P00558 417 aa19.41■□□□□ 0.7
TRIM54-203ENST00000485306 CYP21A2P08686 494 aa19.41■□□□□ 0.7
TRIM54-203ENST00000485306 SNHG28P0DPA3 235 aa19.41■□□□□ 0.7
TRIM54-203ENST00000485306 BMP8BP34820 402 aa19.41■□□□□ 0.7
TRIM54-203ENST00000485306 ADCYAP1R1P41586 468 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms