RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 CEACAM5P06731 702 aa10.76□□□□□ -0.69
MCF2-207ENST00000483690 CD3EP07766 207 aa10.76□□□□□ -0.69
MCF2-207ENST00000483690 PABPC4Q13310 644 aaKnown RBP eCLIP10.76□□□□□ -0.69
MCF2-207ENST00000483690 SF1Q15637 639 aaKnown RBP10.76□□□□□ -0.69
MCF2-207ENST00000483690 NKPD1Q17RQ9 610 aa10.76□□□□□ -0.69
MCF2-207ENST00000483690 FNDC3BQ53EP0 1204 aaKnown RBP10.76□□□□□ -0.69
MCF2-207ENST00000483690 SPACA3Q8IXA5 215 aa10.76□□□□□ -0.69
MCF2-207ENST00000483690 ZCRB1Q8TBF4 217 aaKnown RBP10.76□□□□□ -0.69
MCF2-207ENST00000483690 NINJ1Q92982 152 aa10.76□□□□□ -0.69
MCF2-207ENST00000483690 TCTN2Q96GX1 697 aa10.76□□□□□ -0.69
MCF2-207ENST00000483690 MRPL4Q9BYD3 311 aaKnown RBP10.76□□□□□ -0.69
MCF2-207ENST00000483690 RFPL3O75679 317 aa10.75□□□□□ -0.69
MCF2-207ENST00000483690 CPP00450 1065 aa10.75□□□□□ -0.69
MCF2-207ENST00000483690 NOP2P46087 812 aaKnown RBP10.75□□□□□ -0.69
MCF2-207ENST00000483690 CLCN7P51798 805 aa10.75□□□□□ -0.69
MCF2-207ENST00000483690 MAP4K2Q12851 820 aa10.75□□□□□ -0.69
MCF2-207ENST00000483690 TSPYL5Q86VY4 417 aaPredicted RBP10.75□□□□□ -0.69
MCF2-207ENST00000483690 NIM1KQ8IY84 436 aa10.75□□□□□ -0.69
MCF2-207ENST00000483690 CYP26A1O43174 497 aa10.74□□□□□ -0.69
MCF2-207ENST00000483690 SCG5P05408 212 aa10.74□□□□□ -0.69
MCF2-207ENST00000483690 IBSPP21815 317 aaPredicted RBP10.74□□□□□ -0.69
MCF2-207ENST00000483690 BMP8BP34820 402 aa10.74□□□□□ -0.69
MCF2-207ENST00000483690 ECI1P42126 302 aa10.74□□□□□ -0.69
MCF2-207ENST00000483690 SCRN1Q12765 414 aa10.74□□□□□ -0.69
MCF2-207ENST00000483690 TMEM145Q8NBT3 493 aa10.74□□□□□ -0.69
MCF2-207ENST00000483690 MFSD3Q96ES6 412 aa10.74□□□□□ -0.69
MCF2-207ENST00000483690 HSPA12BQ96MM6 686 aa10.74□□□□□ -0.69
MCF2-207ENST00000483690 H3BS24 57 aa10.73□□□□□ -0.69
MCF2-207ENST00000483690 STXBP3O00186 592 aa10.73□□□□□ -0.69
MCF2-207ENST00000483690 TPP2P29144 1249 aaPredicted RBP10.73□□□□□ -0.69
MCF2-207ENST00000483690 MASP1P48740 699 aa10.73□□□□□ -0.69
MCF2-207ENST00000483690 IFI16Q16666 785 aaKnown RBP10.73□□□□□ -0.69
MCF2-207ENST00000483690 THAP5Q7Z6K1 395 aa10.73□□□□□ -0.69
MCF2-207ENST00000483690 SLC51AQ86UW1 340 aa10.73□□□□□ -0.69
MCF2-207ENST00000483690 DHX37Q8IY37 1157 aaKnown RBP10.73□□□□□ -0.69
MCF2-207ENST00000483690 GPATCH3Q96I76 525 aa10.73□□□□□ -0.69
MCF2-207ENST00000483690 ZSWIM5Q9P217 1185 aa10.73□□□□□ -0.69
MCF2-207ENST00000483690 SFMBT1Q9UHJ3 866 aa10.73□□□□□ -0.69
MCF2-207ENST00000483690 RNF112Q9ULX5 631 aa10.73□□□□□ -0.69
MCF2-207ENST00000483690 SSU72P8A0A1W2PR75 194 aa10.72□□□□□ -0.69
MCF2-207ENST00000483690 AURKAO14965 403 aa10.72□□□□□ -0.69
MCF2-207ENST00000483690 VAV1P15498 845 aa10.72□□□□□ -0.69
MCF2-207ENST00000483690 PCBP3P57721 371 aaKnown RBP10.72□□□□□ -0.69
MCF2-207ENST00000483690 NETO1Q8TDF5 533 aa10.72□□□□□ -0.69
MCF2-207ENST00000483690 UBE2FQ969M7 185 aa10.72□□□□□ -0.69
MCF2-207ENST00000483690 PIM2Q9P1W9 311 aa10.72□□□□□ -0.69
MCF2-207ENST00000483690 PLAGL2Q9UPG8 496 aa10.72□□□□□ -0.69
MCF2-207ENST00000483690 BACE2Q9Y5Z0 518 aa10.72□□□□□ -0.69
MCF2-207ENST00000483690 C2orf71A6NGG8 1288 aa10.71□□□□□ -0.69
MCF2-207ENST00000483690 IRS4O14654 1257 aaPredicted RBP10.71□□□□□ -0.69
MCF2-207ENST00000483690 GABREP78334 506 aa10.71□□□□□ -0.69
MCF2-207ENST00000483690 PRSS53Q2L4Q9 553 aa10.71□□□□□ -0.69
MCF2-207ENST00000483690 TM4SF20Q53R12 229 aa10.71□□□□□ -0.69
MCF2-207ENST00000483690 PLD6Q8N2A8 252 aaKnown RBP10.71□□□□□ -0.69
MCF2-207ENST00000483690 CLUHP3Q96NS8 147 aa10.71□□□□□ -0.69
MCF2-207ENST00000483690 FCRL3Q96P31 734 aaPredicted RBP10.71□□□□□ -0.69
MCF2-207ENST00000483690 MCMBPQ9BTE3 642 aa10.71□□□□□ -0.69
MCF2-207ENST00000483690 BRINP2Q9C0B6 783 aa10.71□□□□□ -0.69
MCF2-207ENST00000483690 NDOR1Q9UHB4 597 aa10.71□□□□□ -0.69
MCF2-207ENST00000483690 COL4A3BPQ9Y5P4 624 aa10.71□□□□□ -0.69
MCF2-207ENST00000483690 hCG_2014768A0A024R1R8 64 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 TMEM265A0A087WTH1 108 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 BLACEA4D250 179 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 SYPP08247 313 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 C6orf222P0C671 652 aaPredicted RBP10.7□□□□□ -0.7
MCF2-207ENST00000483690 IFNGR1P15260 489 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 NKAPLQ5M9Q1 402 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 SLC35F1Q5T1Q4 408 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 USP53Q70EK8 1073 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 ZDHHC13Q8IUH4 622 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 LINC00116Q8NCU8 138 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 COPS5Q92905 334 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 C1orf159Q96HA4 380 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 SLC12A9Q9BXP2 914 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 DUSP13Q9UII6 198 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 TCFL5Q9UL49 500 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 SNX11Q9Y5W9 270 aa10.7□□□□□ -0.7
MCF2-207ENST00000483690 WASH4PA8MWX3 477 aa10.69□□□□□ -0.7
MCF2-207ENST00000483690 EFCAB14O75071 495 aa10.69□□□□□ -0.7
MCF2-207ENST00000483690 ZNF205O95201 554 aa10.69□□□□□ -0.7
MCF2-207ENST00000483690 LTKP29376 864 aa10.69□□□□□ -0.7
MCF2-207ENST00000483690 SEPHS1P49903 392 aa10.69□□□□□ -0.7
MCF2-207ENST00000483690 RSPO4Q2I0M5 234 aaPredicted RBP10.69□□□□□ -0.7
MCF2-207ENST00000483690 TRIM61Q5EBN2 209 aa10.69□□□□□ -0.7
MCF2-207ENST00000483690 TMPRSS7Q7RTY8 843 aa10.69□□□□□ -0.7
MCF2-207ENST00000483690 PTPRN2Q92932 1015 aa10.69□□□□□ -0.7
MCF2-207ENST00000483690 PROCP04070 461 aa10.68□□□□□ -0.7
MCF2-207ENST00000483690 THBDP07204 575 aa10.68□□□□□ -0.7
MCF2-207ENST00000483690 GSTM1P09488 218 aa10.68□□□□□ -0.7
MCF2-207ENST00000483690 MYCLP1P12525 358 aaPredicted RBP10.68□□□□□ -0.7
MCF2-207ENST00000483690 FOSL1P15407 271 aa10.68□□□□□ -0.7
MCF2-207ENST00000483690 CYP4F3Q08477 520 aa10.68□□□□□ -0.7
MCF2-207ENST00000483690 NTRK3Q16288 839 aa10.68□□□□□ -0.7
MCF2-207ENST00000483690 GAB4Q2WGN9 574 aa10.68□□□□□ -0.7
MCF2-207ENST00000483690 RNF111Q6ZNA4 994 aa10.68□□□□□ -0.7
MCF2-207ENST00000483690 MAMDC2Q7Z304 686 aaPredicted RBP10.68□□□□□ -0.7
MCF2-207ENST00000483690 KSR1Q8IVT5 923 aa10.68□□□□□ -0.7
MCF2-207ENST00000483690 PPIL6Q8IXY8 311 aa10.68□□□□□ -0.7
MCF2-207ENST00000483690 USHBP1Q8N6Y0 703 aa10.68□□□□□ -0.7
MCF2-207ENST00000483690 SPOCK3Q9BQ16 436 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms