RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 RBM5P52756 815 aaKnown RBP eCLIP14.98□□□□□ -0.01
USP42-206ENST00000479544 ADCY1Q08828 1119 aa14.98□□□□□ -0.01
USP42-206ENST00000479544 SCARF1Q14162 830 aa14.98□□□□□ -0.01
USP42-206ENST00000479544 SENP2Q9HC62 589 aa14.98□□□□□ -0.01
USP42-206ENST00000479544 ALKQ9UM73 1620 aa14.98□□□□□ -0.01
USP42-206ENST00000479544 PHKG2P15735 406 aa14.98□□□□□ -0.01
USP42-206ENST00000479544 ABHD10Q9NUJ1 306 aa14.98□□□□□ -0.01
USP42-206ENST00000479544 TTC26A0AVF1 554 aa14.98□□□□□ -0.01
USP42-206ENST00000479544 GOLGA8HP0CJ92 632 aa14.98□□□□□ -0.01
USP42-206ENST00000479544 CUL4BQ13620 913 aa14.98□□□□□ -0.01
USP42-206ENST00000479544 IFI16Q16666 785 aaKnown RBP14.98□□□□□ -0.01
USP42-206ENST00000479544 ANKRD42Q8N9B4 389 aa14.98□□□□□ -0.01
USP42-206ENST00000479544 GREM2Q9H772 168 aa14.98□□□□□ -0.01
USP42-206ENST00000479544 VEZTQ9HBM0 779 aa14.98□□□□□ -0.01
USP42-206ENST00000479544 SH2B2O14492 632 aaPredicted RBP14.97□□□□□ -0.01
USP42-206ENST00000479544 NCK2O43639 380 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 IL2RBP14784 551 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 ABCB4P21439 1286 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 TECP42680 631 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 LRRC41Q15345 812 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 NUP58Q9BVL2 599 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 SAP30BPQ9UHR5 308 aaKnown RBP14.97□□□□□ -0.01
USP42-206ENST00000479544 SH3TC1Q8TE82 1336 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 PTPREP23469 700 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 PCK1P35558 622 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 CABP7Q86V35 215 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 ARHGEF25Q86VW2 580 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 CNOT6LQ96LI5 555 aaKnown RBP14.97□□□□□ -0.01
USP42-206ENST00000479544 MLXIPQ9HAP2 919 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 NIP7Q9Y221 180 aaKnown RBP eCLIP14.97□□□□□ -0.01
USP42-206ENST00000479544 NHEJ1Q9H9Q4 299 aaPredicted RBP14.97□□□□□ -0.01
USP42-206ENST00000479544 GTPBP6O43824 516 aaPredicted RBP14.97□□□□□ -0.01
USP42-206ENST00000479544 TCP1P17987 556 aaKnown RBP14.97□□□□□ -0.01
USP42-206ENST00000479544 GNAT2P19087 354 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 POLR2FP61218 127 aaKnown RBP14.97□□□□□ -0.01
USP42-206ENST00000479544 HIBCHQ6NVY1 386 aaPredicted RBP14.97□□□□□ -0.01
USP42-206ENST00000479544 LRRC45Q96CN5 670 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 GJD4Q96KN9 370 aaPredicted RBP14.97□□□□□ -0.01
USP42-206ENST00000479544 BPIFA3Q9BQP9 254 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 CD2APQ9Y5K6 639 aa14.97□□□□□ -0.01
USP42-206ENST00000479544 EXOSC10Q01780 885 aaKnown RBP14.96□□□□□ -0.01
USP42-206ENST00000479544 HERC4Q5GLZ8 1057 aaPredicted RBP14.96□□□□□ -0.01
USP42-206ENST00000479544 RUFY4Q6ZNE9 571 aa14.96□□□□□ -0.01
USP42-206ENST00000479544 SYCP3Q8IZU3 236 aa14.96□□□□□ -0.01
USP42-206ENST00000479544 NSRP1Q9H0G5 558 aaKnown RBP14.96□□□□□ -0.01
USP42-206ENST00000479544 F8W031 263 aaPredicted RBP14.96□□□□□ -0.01
USP42-206ENST00000479544 GUCY1A3Q02108 690 aa14.96□□□□□ -0.01
USP42-206ENST00000479544 RBM43Q6ZSC3 357 aaKnown RBP14.96□□□□□ -0.01
USP42-206ENST00000479544 PROCA1Q8NCQ7 364 aaPredicted RBP14.96□□□□□ -0.01
USP42-206ENST00000479544 CTDP1Q9Y5B0 961 aaPredicted RBP14.96□□□□□ -0.01
USP42-206ENST00000479544 CALM1P0DP23 149 aa14.96□□□□□ -0.02
USP42-206ENST00000479544 CALM2P0DP24 149 aa14.96□□□□□ -0.02
USP42-206ENST00000479544 CALM3P0DP25 149 aa14.96□□□□□ -0.02
USP42-206ENST00000479544 EIF4A3P38919 411 aaKnown RBP14.96□□□□□ -0.02
USP42-206ENST00000479544 PEX26Q7Z412 305 aa14.96□□□□□ -0.02
USP42-206ENST00000479544 ACSBG1Q96GR2 724 aa14.96□□□□□ -0.02
USP42-206ENST00000479544 FAM184BQ9ULE4 1060 aa14.96□□□□□ -0.02
USP42-206ENST00000479544 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.96□□□□□ -0.02
USP42-206ENST00000479544 SRPRBQ9Y5M8 271 aaKnown RBP14.96□□□□□ -0.02
USP42-206ENST00000479544 C1orf167Q5SNV9 1468 aa14.96□□□□□ -0.02
USP42-206ENST00000479544 ZNF609O15014 1411 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 CRB1P82279 1406 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 ARID4AP29374 1257 aaPredicted RBP14.95□□□□□ -0.02
USP42-206ENST00000479544 SARNPP82979 210 aaKnown RBP14.95□□□□□ -0.02
USP42-206ENST00000479544 PUM3Q15397 648 aaKnown RBP14.95□□□□□ -0.02
USP42-206ENST00000479544 NFRKBQ6P4R8 1299 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 TEX11Q8IYF3 940 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 A0A0U1RQJ8 604 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 CCDC152Q4G0S7 254 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 GKAP1Q5VSY0 366 aaPredicted RBP14.95□□□□□ -0.02
USP42-206ENST00000479544 COG1Q8WTW3 980 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 PPP1R1BQ9UD71 204 aaPredicted RBP14.95□□□□□ -0.02
USP42-206ENST00000479544 IFNAR1P17181 557 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 NR1D1P20393 614 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 BEND6Q5SZJ8 279 aaPredicted RBP14.95□□□□□ -0.02
USP42-206ENST00000479544 TRIM65Q6PJ69 517 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 C6orf50Q9HD87 102 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 BAZ2BQ9UIF8 2168 aaKnown RBP14.95□□□□□ -0.02
USP42-206ENST00000479544 KRIT1O00522 736 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 VPS41P49754 854 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 NCAPHQ15003 741 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 CNNM4Q6P4Q7 775 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 CCDC26Q8TAB7 109 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 TFCP2L1Q9NZI6 479 aa14.95□□□□□ -0.02
USP42-206ENST00000479544 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.95□□□□□ -0.02
USP42-206ENST00000479544 FMNL1O95466 1100 aaPredicted RBP14.94□□□□□ -0.02
USP42-206ENST00000479544 SLCO1A2P46721 670 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 TCP11X2Q5H9J9 407 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 SFMBT2Q5VUG0 894 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 KLHL34Q8N239 644 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 SNX29Q8TEQ0 813 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 FOXP1Q9H334 677 aaPredicted RBP14.94□□□□□ -0.02
USP42-206ENST00000479544 MYO1AQ9UBC5 1043 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 LRRIQ3A6PVS8 624 aaPredicted RBP14.94□□□□□ -0.02
USP42-206ENST00000479544 USP14P54578 494 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 EPHB4P54760 987 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 PICALMQ13492 652 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 SNCBQ16143 134 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 TSGA10IPQ3SY00 556 aa14.94□□□□□ -0.02
USP42-206ENST00000479544 FAM133BQ5BKY9 247 aaKnown RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms