RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 KLRC3Q07444 240 aa20.61■□□□□ 0.89
VIM-204ENST00000478746 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.61■□□□□ 0.89
VIM-204ENST00000478746 CXXC1Q9P0U4 656 aaPredicted RBP20.61■□□□□ 0.89
VIM-204ENST00000478746 CD4P01730 458 aa20.6■□□□□ 0.89
VIM-204ENST00000478746 PLA2G5P39877 138 aa20.6■□□□□ 0.89
VIM-204ENST00000478746 FAM122AQ96E09 287 aa20.6■□□□□ 0.89
VIM-204ENST00000478746 RAVER2Q9HCJ3 691 aaKnown RBP20.6■□□□□ 0.89
VIM-204ENST00000478746 NYAP2Q9P242 653 aa20.6■□□□□ 0.89
VIM-204ENST00000478746 NDUFB10O96000 172 aa20.59■□□□□ 0.89
VIM-204ENST00000478746 UBE3CQ15386 1083 aa20.59■□□□□ 0.89
VIM-204ENST00000478746 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.59■□□□□ 0.89
VIM-204ENST00000478746 ARMCX2Q7L311 632 aa20.59■□□□□ 0.89
VIM-204ENST00000478746 KIFC2Q96AC6 838 aa20.59■□□□□ 0.89
VIM-204ENST00000478746 HIPK3Q9H422 1215 aa20.59■□□□□ 0.89
VIM-204ENST00000478746 FBXO40Q9UH90 709 aa20.59■□□□□ 0.89
VIM-204ENST00000478746 YBX2Q9Y2T7 364 aaKnown RBP20.59■□□□□ 0.89
VIM-204ENST00000478746 MCM3APO60318 1980 aa20.59■□□□□ 0.89
VIM-204ENST00000478746 CCER2I3L3R5 266 aa20.58■□□□□ 0.89
VIM-204ENST00000478746 CTAGE5O15320 804 aa20.58■□□□□ 0.89
VIM-204ENST00000478746 CHGBP05060 677 aa20.58■□□□□ 0.89
VIM-204ENST00000478746 BEX3Q00994 111 aa20.58■□□□□ 0.89
VIM-204ENST00000478746 NOL8Q76FK4 1167 aaKnown RBP20.58■□□□□ 0.89
VIM-204ENST00000478746 OTOP2Q7RTS6 562 aa20.58■□□□□ 0.89
VIM-204ENST00000478746 CCDC144CPQ8IYA2 1237 aa20.58■□□□□ 0.89
VIM-204ENST00000478746 CHST13Q8NET6 341 aa20.58■□□□□ 0.89
VIM-204ENST00000478746 FGD4Q96M96 766 aa20.58■□□□□ 0.89
VIM-204ENST00000478746 MKNK2Q9HBH9 465 aa20.58■□□□□ 0.89
VIM-204ENST00000478746 CLIP2Q9UDT6 1046 aa20.58■□□□□ 0.89
VIM-204ENST00000478746 ZBED9Q6R2W3 1325 aa20.57■□□□□ 0.88
VIM-204ENST00000478746 ATP5JP18859 108 aa20.57■□□□□ 0.88
VIM-204ENST00000478746 NKX3-2P78367 333 aa20.57■□□□□ 0.88
VIM-204ENST00000478746 TNFAIP2Q03169 654 aa20.57■□□□□ 0.88
VIM-204ENST00000478746 STK11IPQ8N1F8 1099 aa20.57■□□□□ 0.88
VIM-204ENST00000478746 SLC43A3Q8NBI5 491 aa20.57■□□□□ 0.88
VIM-204ENST00000478746 SLC38A10Q9HBR0 1119 aa20.57■□□□□ 0.88
VIM-204ENST00000478746 ARPP21Q9UBL0 812 aaPredicted RBP20.57■□□□□ 0.88
VIM-204ENST00000478746 CHD7Q9P2D1 2997 aa20.57■□□□□ 0.88
VIM-204ENST00000478746 TCF20Q9UGU0 1960 aaKnown RBP20.56■□□□□ 0.88
VIM-204ENST00000478746 CABYRO75952 493 aa20.56■□□□□ 0.88
VIM-204ENST00000478746 RASA1P20936 1047 aa20.56■□□□□ 0.88
VIM-204ENST00000478746 RABGGTBP53611 331 aa20.56■□□□□ 0.88
VIM-204ENST00000478746 CCL23P55773 120 aa20.56■□□□□ 0.88
VIM-204ENST00000478746 CXCL17Q6UXB2 119 aa20.56■□□□□ 0.88
VIM-204ENST00000478746 MICALL1Q8N3F8 863 aa20.56■□□□□ 0.88
VIM-204ENST00000478746 HAUS7Q99871 368 aa20.56■□□□□ 0.88
VIM-204ENST00000478746 PUS7LQ9H0K6 701 aaKnown RBP20.56■□□□□ 0.88
VIM-204ENST00000478746 FEM1BQ9UK73 627 aa20.56■□□□□ 0.88
VIM-204ENST00000478746 UMODL1Q5DID0 1318 aa20.55■□□□□ 0.88
VIM-204ENST00000478746 BMP1P13497 986 aa20.55■□□□□ 0.88
VIM-204ENST00000478746 CNTN2Q02246 1040 aa20.55■□□□□ 0.88
VIM-204ENST00000478746 ITGA7Q13683 1181 aa20.55■□□□□ 0.88
VIM-204ENST00000478746 ZSCAN25Q6NSZ9 544 aa20.55■□□□□ 0.88
VIM-204ENST00000478746 RPUSD2Q8IZ73 545 aaKnown RBP20.55■□□□□ 0.88
VIM-204ENST00000478746 C1QTNF1Q9BXJ1 281 aa20.55■□□□□ 0.88
VIM-204ENST00000478746 KATNBL1Q9H079 304 aa20.55■□□□□ 0.88
VIM-204ENST00000478746 SLC4A7Q9Y6M7 1214 aa20.55■□□□□ 0.88
VIM-204ENST00000478746 GBF1Q92538 1859 aa20.54■□□□□ 0.88
VIM-204ENST00000478746 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.54■□□□□ 0.88
VIM-204ENST00000478746 RAB11FIP3O75154 756 aa20.54■□□□□ 0.88
VIM-204ENST00000478746 OAZ1P54368 228 aa20.54■□□□□ 0.88
VIM-204ENST00000478746 AAK1Q2M2I8 961 aa20.54■□□□□ 0.88
VIM-204ENST00000478746 SBK1Q52WX2 424 aa20.54■□□□□ 0.88
VIM-204ENST00000478746 PPP2R2DQ66LE6 453 aa20.54■□□□□ 0.88
VIM-204ENST00000478746 PANK1Q8TE04 598 aa20.54■□□□□ 0.88
VIM-204ENST00000478746 NECAB3Q96P71 396 aaPredicted RBP20.54■□□□□ 0.88
VIM-204ENST00000478746 SEZ6LQ9BYH1 1024 aa20.54■□□□□ 0.88
VIM-204ENST00000478746 AP5M1Q9H0R1 490 aa20.54■□□□□ 0.88
VIM-204ENST00000478746 HOMER2Q9NSB8 354 aa20.54■□□□□ 0.88
VIM-204ENST00000478746 PCDHA11Q9Y5I1 949 aa20.54■□□□□ 0.88
VIM-204ENST00000478746 MINDY4BA8MYZ0 360 aa20.53■□□□□ 0.88
VIM-204ENST00000478746 DYNC1LI2O43237 492 aaPredicted RBP20.53■□□□□ 0.88
VIM-204ENST00000478746 ZEB2O60315 1214 aa20.53■□□□□ 0.88
VIM-204ENST00000478746 HMMRO75330 724 aa20.53■□□□□ 0.88
VIM-204ENST00000478746 FSCN1Q16658 493 aaKnown RBP20.53■□□□□ 0.88
VIM-204ENST00000478746 RPAP2Q8IXW5 612 aaPredicted RBP20.53■□□□□ 0.88
VIM-204ENST00000478746 MKL1Q969V6 931 aa20.53■□□□□ 0.88
VIM-204ENST00000478746 NOC4LQ9BVI4 516 aaKnown RBP20.53■□□□□ 0.88
VIM-204ENST00000478746 TRPV6Q9H1D0 765 aa20.53■□□□□ 0.88
VIM-204ENST00000478746 GNEQ9Y223 722 aaKnown RBP20.53■□□□□ 0.88
VIM-204ENST00000478746 ASTN1O14525 1302 aa20.53■□□□□ 0.88
VIM-204ENST00000478746 REV3LO60673 3130 aa20.52■□□□□ 0.88
VIM-204ENST00000478746 ASB14A6NK59 587 aa20.52■□□□□ 0.88
VIM-204ENST00000478746 MYOGP15173 224 aa20.52■□□□□ 0.88
VIM-204ENST00000478746 TFF2Q03403 129 aa20.52■□□□□ 0.88
VIM-204ENST00000478746 SKIV2LQ15477 1246 aaKnown RBP20.52■□□□□ 0.88
VIM-204ENST00000478746 TLK2Q86UE8 772 aa20.52■□□□□ 0.88
VIM-204ENST00000478746 ZNF444Q8N0Y2 327 aaPredicted RBP20.52■□□□□ 0.88
VIM-204ENST00000478746 FAM133AQ8N9E0 248 aa20.52■□□□□ 0.88
VIM-204ENST00000478746 STRBPQ96SI9 672 aaKnown RBP20.52■□□□□ 0.88
VIM-204ENST00000478746 GRIN2DO15399 1336 aa20.52■□□□□ 0.87
VIM-204ENST00000478746 GREB1LQ9C091 1923 aaPredicted RBP20.51■□□□□ 0.87
VIM-204ENST00000478746 ZBBXA8MT70 800 aa20.51■□□□□ 0.87
VIM-204ENST00000478746 B4GALT4O60513 344 aa20.51■□□□□ 0.87
VIM-204ENST00000478746 FDX1P10109 184 aa20.51■□□□□ 0.87
VIM-204ENST00000478746 WNT8AQ9H1J5 351 aa20.51■□□□□ 0.87
VIM-204ENST00000478746 ACAD9Q9H845 621 aa20.51■□□□□ 0.87
VIM-204ENST00000478746 IGKV6D-41A0A0C4DH26 115 aa20.5■□□□□ 0.87
VIM-204ENST00000478746 GSG1L2A8MUP6 293 aa20.5■□□□□ 0.87
VIM-204ENST00000478746 ATP2A2P16615 1042 aaKnown RBP20.5■□□□□ 0.87
VIM-204ENST00000478746 GIMAP6Q6P9H5 292 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms