RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 GJC2Q5T442 439 aaPredicted RBP14.19□□□□□ -0.14
SYNE1-223ENST00000476519 ANO1Q5XXA6 986 aa14.19□□□□□ -0.14
SYNE1-223ENST00000476519 RNF180Q86T96 592 aa14.19□□□□□ -0.14
SYNE1-223ENST00000476519 IQCA1Q86XH1 822 aa14.19□□□□□ -0.14
SYNE1-223ENST00000476519 TBC1D10CQ8IV04 446 aa14.19□□□□□ -0.14
SYNE1-223ENST00000476519 ANKS1AQ92625 1134 aa14.19□□□□□ -0.14
SYNE1-223ENST00000476519 TRERF1Q96PN7 1200 aa14.19□□□□□ -0.14
SYNE1-223ENST00000476519 GDF15Q99988 308 aa14.19□□□□□ -0.14
SYNE1-223ENST00000476519 PCDH10Q9P2E7 1040 aa14.19□□□□□ -0.14
SYNE1-223ENST00000476519 FAM184BQ9ULE4 1060 aa14.19□□□□□ -0.14
SYNE1-223ENST00000476519 ZNF236Q9UL36 1845 aa14.19□□□□□ -0.14
SYNE1-223ENST00000476519 DNAH12Q6ZR08 3092 aa14.18□□□□□ -0.14
SYNE1-223ENST00000476519 POTEB2H3BUK9 544 aa14.18□□□□□ -0.14
SYNE1-223ENST00000476519 ICAM1P05362 532 aa14.18□□□□□ -0.14
SYNE1-223ENST00000476519 SNHG28P0DPA3 235 aa14.18□□□□□ -0.14
SYNE1-223ENST00000476519 TAL1P17542 331 aaPredicted RBP14.18□□□□□ -0.14
SYNE1-223ENST00000476519 IRX6P78412 446 aaPredicted RBP14.18□□□□□ -0.14
SYNE1-223ENST00000476519 LRRC41Q15345 812 aa14.18□□□□□ -0.14
SYNE1-223ENST00000476519 FAM133AQ8N9E0 248 aa14.18□□□□□ -0.14
SYNE1-223ENST00000476519 RUFY2Q8WXA3 655 aa14.18□□□□□ -0.14
SYNE1-223ENST00000476519 CHMP4CQ96CF2 233 aa14.18□□□□□ -0.14
SYNE1-223ENST00000476519 RANBP17Q9H2T7 1088 aaKnown RBP14.18□□□□□ -0.14
SYNE1-223ENST00000476519 ABHD16BQ9H3Z7 469 aa14.18□□□□□ -0.14
SYNE1-223ENST00000476519 XPNPEP3Q9NQH7 507 aa14.18□□□□□ -0.14
SYNE1-223ENST00000476519 HOMER2Q9NSB8 354 aa14.18□□□□□ -0.14
SYNE1-223ENST00000476519 RNF146Q9NTX7 359 aa14.18□□□□□ -0.14
SYNE1-223ENST00000476519 ZMYND8Q9ULU4 1186 aaPredicted RBP14.18□□□□□ -0.14
SYNE1-223ENST00000476519 MTMR7Q9Y216 660 aa14.18□□□□□ -0.14
SYNE1-223ENST00000476519 PDHBP11177 359 aa14.17□□□□□ -0.14
SYNE1-223ENST00000476519 ALAS1P13196 640 aa14.17□□□□□ -0.14
SYNE1-223ENST00000476519 GSPT1P15170 499 aaKnown RBP14.17□□□□□ -0.14
SYNE1-223ENST00000476519 ATN1P54259 1190 aaPredicted RBP14.17□□□□□ -0.14
SYNE1-223ENST00000476519 ACVR2BQ13705 512 aa14.17□□□□□ -0.14
SYNE1-223ENST00000476519 SYDE2Q5VT97 1194 aa14.17□□□□□ -0.14
SYNE1-223ENST00000476519 C1orf53Q5VUE5 145 aa14.17□□□□□ -0.14
SYNE1-223ENST00000476519 TTBK2Q6IQ55 1244 aa14.17□□□□□ -0.14
SYNE1-223ENST00000476519 CCDC174Q6PII3 467 aa14.17□□□□□ -0.14
SYNE1-223ENST00000476519 SLC39A5Q6ZMH5 540 aa14.17□□□□□ -0.14
SYNE1-223ENST00000476519 TSEN34Q9BSV6 310 aaKnown RBP14.17□□□□□ -0.14
SYNE1-223ENST00000476519 KRT23Q9C075 422 aa14.17□□□□□ -0.14
SYNE1-223ENST00000476519 CNNM2Q9H8M5 875 aa14.17□□□□□ -0.14
SYNE1-223ENST00000476519 A1CFQ9NQ94 594 aaKnown RBP14.17□□□□□ -0.14
SYNE1-223ENST00000476519 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.17□□□□□ -0.14
SYNE1-223ENST00000476519 ASB14A6NK59 587 aa14.16□□□□□ -0.14
SYNE1-223ENST00000476519 KDM4AO75164 1064 aa14.16□□□□□ -0.14
SYNE1-223ENST00000476519 DUSP11O75319 330 aaKnown RBP14.16□□□□□ -0.14
SYNE1-223ENST00000476519 MYCNP04198 464 aaPredicted RBP14.16□□□□□ -0.14
SYNE1-223ENST00000476519 SLC16A2P36021 539 aa14.16□□□□□ -0.14
SYNE1-223ENST00000476519 ADCYAP1R1P41586 468 aa14.16□□□□□ -0.14
SYNE1-223ENST00000476519 ZNF543Q08ER8 600 aa14.16□□□□□ -0.14
SYNE1-223ENST00000476519 GPATCH4Q5T3I0 446 aaKnown RBP14.16□□□□□ -0.14
SYNE1-223ENST00000476519 FGD4Q96M96 766 aa14.16□□□□□ -0.14
SYNE1-223ENST00000476519 ZSCAN10Q96SZ4 725 aaPredicted RBP14.16□□□□□ -0.14
SYNE1-223ENST00000476519 GPCPD1Q9NPB8 672 aa14.16□□□□□ -0.14
SYNE1-223ENST00000476519 ZSWIM5Q9P217 1185 aa14.16□□□□□ -0.14
SYNE1-223ENST00000476519 CCPG1Q9ULG6 757 aa14.16□□□□□ -0.14
SYNE1-223ENST00000476519 PHF24Q9UPV7 400 aa14.16□□□□□ -0.14
SYNE1-223ENST00000476519 LAMA3Q16787 3333 aa14.16□□□□□ -0.14
SYNE1-223ENST00000476519 NEDD4P46934 1319 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 RAD50Q92878 1312 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 PGK1P00558 417 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 SYN1P17600 705 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 CHMLP26374 656 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 MAGEA10P43363 369 aaPredicted RBP14.15□□□□□ -0.14
SYNE1-223ENST00000476519 SNAP25P60880 206 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 CNTN2Q02246 1040 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 SNX17Q15036 470 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 ARMCX2Q7L311 632 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 CCDC144CPQ8IYA2 1237 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 SPC25Q9HBM1 224 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 CYP39A1Q9NYL5 469 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 PRKAG2Q9UGJ0 569 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 ZHX1Q9UKY1 873 aaPredicted RBP14.15□□□□□ -0.14
SYNE1-223ENST00000476519 SZT2Q5T011 3432 aa14.15□□□□□ -0.14
SYNE1-223ENST00000476519 PARP14Q460N5 1801 aa14.14□□□□□ -0.15
SYNE1-223ENST00000476519 LOC102724159A0A0B4J2E5 919 aa14.14□□□□□ -0.15
SYNE1-223ENST00000476519 SOWAHBA6NEL2 793 aa14.14□□□□□ -0.15
SYNE1-223ENST00000476519 B4E1Z4 1266 aa14.14□□□□□ -0.15
SYNE1-223ENST00000476519 ADAMTS4O75173 837 aa14.14□□□□□ -0.15
SYNE1-223ENST00000476519 RTP1P59025 263 aa14.14□□□□□ -0.15
SYNE1-223ENST00000476519 PWP2Q15269 919 aaKnown RBP14.14□□□□□ -0.15
SYNE1-223ENST00000476519 RASGRP2Q7LDG7 609 aa14.14□□□□□ -0.15
SYNE1-223ENST00000476519 PNMA1Q8ND90 353 aa14.14□□□□□ -0.15
SYNE1-223ENST00000476519 KLHDC9Q8NEP7 349 aa14.14□□□□□ -0.15
SYNE1-223ENST00000476519 ZKSCAN3Q9BRR0 538 aa14.14□□□□□ -0.15
SYNE1-223ENST00000476519 MAF1Q9H063 256 aa14.14□□□□□ -0.15
SYNE1-223ENST00000476519 KAT14Q9H8E8 782 aa14.14□□□□□ -0.15
SYNE1-223ENST00000476519 U3KPZ7 1027 aaPredicted RBP14.14□□□□□ -0.15
SYNE1-223ENST00000476519 FRMPD2Q68DX3 1309 aaPredicted RBP14.14□□□□□ -0.15
SYNE1-223ENST00000476519 MOXD2PA6NHM9 499 aa14.13□□□□□ -0.15
SYNE1-223ENST00000476519 NKX3-2P78367 333 aa14.13□□□□□ -0.15
SYNE1-223ENST00000476519 CCDC144BQ3MJ40 725 aa14.13□□□□□ -0.15
SYNE1-223ENST00000476519 MUM1L1Q5H9M0 696 aa14.13□□□□□ -0.15
SYNE1-223ENST00000476519 ENAHQ8N8S7 591 aaPredicted RBP14.13□□□□□ -0.15
SYNE1-223ENST00000476519 PCSK9Q8NBP7 692 aaKnown RBP14.13□□□□□ -0.15
SYNE1-223ENST00000476519 NUP133Q8WUM0 1156 aa14.13□□□□□ -0.15
SYNE1-223ENST00000476519 FERMT2Q96AC1 680 aa14.13□□□□□ -0.15
SYNE1-223ENST00000476519 LBHD1Q9BQE6 289 aaPredicted RBP14.13□□□□□ -0.15
SYNE1-223ENST00000476519 UBAC1Q9BSL1 405 aa14.13□□□□□ -0.15
SYNE1-223ENST00000476519 KATNBL1Q9H079 304 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms