RNA–Protein interactions for RNA: ENST00000474258.1

SEMA4D-216, Transcript of semaphorin 4D, humanhuman

TSL 4

Gene SEMA4D, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-216ENST00000474258 DUSP11O75319 330 aaKnown RBP13.09□□□□□ -0.31
SEMA4D-216ENST00000474258 ACVR2BQ13705 512 aa13.09□□□□□ -0.31
SEMA4D-216ENST00000474258 TKFCQ3LXA3 575 aa13.09□□□□□ -0.31
SEMA4D-216ENST00000474258 VPS53Q5VIR6 699 aa13.09□□□□□ -0.31
SEMA4D-216ENST00000474258 CHMP4CQ96CF2 233 aa13.09□□□□□ -0.31
SEMA4D-216ENST00000474258 ACAD9Q9H845 621 aa13.09□□□□□ -0.31
SEMA4D-216ENST00000474258 PDLIM7Q9NR12 457 aa13.09□□□□□ -0.31
SEMA4D-216ENST00000474258 HOMER2Q9NSB8 354 aa13.09□□□□□ -0.31
SEMA4D-216ENST00000474258 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.09□□□□□ -0.31
SEMA4D-216ENST00000474258 ZHX1Q9UKY1 873 aaPredicted RBP13.09□□□□□ -0.31
SEMA4D-216ENST00000474258 TACC3Q9Y6A5 838 aa13.09□□□□□ -0.31
SEMA4D-216ENST00000474258 A0A1W2PQ45 241 aaPredicted RBP13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 A0A1W2PQY0 241 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 MOXD2PA6NHM9 499 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 NMT2O60551 498 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 FGAP02671 866 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 FGRP09769 529 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 NOVP48745 357 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 TLE2Q04725 743 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 KCTD1Q719H9 257 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 Q7L0L9 218 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 SH3RF1Q7Z6J0 888 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 KLHDC9Q8NEP7 349 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 NUP133Q8WUM0 1156 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 BADQ92934 168 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 LENG1Q96BZ8 264 aaPredicted RBP13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 FAM227BQ96M60 508 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 AGBL1Q96MI9 1066 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 LNPKQ9C0E8 428 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 RWDD1Q9H446 243 aaPredicted RBP13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 TOMM22Q9NS69 142 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 MTMR10Q9NXD2 777 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 ZNF536O15090 1300 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 SYNRGQ9UMZ2 1314 aa13.08□□□□□ -0.32
SEMA4D-216ENST00000474258 LCTP09848 1927 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 MYH6P13533 1939 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 A0A0D9SFI3 127 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 TRIM43BA6NCK2 446 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 TRIM6-TRIM34B2RNG4 842 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 POTEB2H3BUK9 544 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 CLTBP09497 229 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 HSPD1P10809 573 aaKnown RBP13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 ALAS1P13196 640 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 ACLYP53396 1101 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 KCNA10Q16322 511 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 CCDC144BQ3MJ40 725 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 ARMCX2Q7L311 632 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 FAM133AQ8N9E0 248 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 RILPL2Q969X0 211 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 TRIM43Q96BQ3 446 aaPredicted RBP13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 FGD4Q96M96 766 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 TRERF1Q96PN7 1200 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 SPC25Q9HBM1 224 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 A1CFQ9NQ94 594 aaKnown RBP13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 STARD7Q9NQZ5 370 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 RNF146Q9NTX7 359 aa13.07□□□□□ -0.32
SEMA4D-216ENST00000474258 ASB14A6NK59 587 aa13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 CST5P28325 142 aaPredicted RBP13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 CNTN2Q02246 1040 aa13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 NMIQ13287 307 aaPredicted RBP13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 SHHQ15465 462 aa13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 RRP12Q5JTH9 1297 aaKnown RBP13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 FAM109BQ6ICB4 259 aaPredicted RBP13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 CCSAPQ6IQ19 270 aaPredicted RBP13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 CCDC174Q6PII3 467 aa13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 SMC5Q8IY18 1101 aa13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 CCDC144CPQ8IYA2 1237 aa13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 PCSK9Q8NBP7 692 aaKnown RBP13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 SLC17A8Q8NDX2 589 aa13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 DCAF4Q8WV16 495 aa13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 TOX2Q96NM4 488 aa13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 TCP11L1Q9NUJ3 509 aa13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 PRR12Q9ULL5 1215 aa13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 MTMR7Q9Y216 660 aa13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 STXBP5LQ9Y2K9 1186 aa13.06□□□□□ -0.32
SEMA4D-216ENST00000474258 LAMA4Q16363 1823 aa13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 DCDC2CA8MYV0 355 aa13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 KIAA0355O15063 1070 aa13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 PQBP1O60828 265 aaKnown RBP13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 C6orf222P0C671 652 aaPredicted RBP13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 TOP1P11387 765 aaKnown RBP13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 PCP11498 1178 aaKnown RBP13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 MFAP1P55081 439 aaKnown RBP13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 GJA9P57773 515 aa13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 CCDC96Q2M329 555 aa13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 CENPQQ7L2Z9 268 aaPredicted RBP13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 ANKRD33Q7Z3H0 272 aa13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 ZNF589Q86UQ0 364 aaPredicted RBP13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 GLT1D1Q96MS3 346 aa13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 KATNBL1Q9H079 304 aa13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 UPF3AQ9H1J1 476 aaKnown RBP13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 TMEM39AQ9NV64 488 aa13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 ELP1O95163 1332 aa13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 ZMYM6O95789 1325 aa13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 CCDC171Q6TFL3 1326 aa13.05□□□□□ -0.32
SEMA4D-216ENST00000474258 COL6A3P12111 3177 aa13.04□□□□□ -0.32
SEMA4D-216ENST00000474258 MYADML2A6NDP7 307 aa13.04□□□□□ -0.32
SEMA4D-216ENST00000474258 SOWAHBA6NEL2 793 aa13.04□□□□□ -0.32
SEMA4D-216ENST00000474258 ADCY6O43306 1168 aa13.04□□□□□ -0.32
SEMA4D-216ENST00000474258 IGHDP01880 384 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms