RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	TTC14	Q96N46	770 aa		13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	NBPF3	Q9H094	633 aa		13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	SLC38A10	Q9HBR0	1119 aa		13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	TCP11L1	Q9NUJ3	509 aa		13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	CCPG1	Q9ULG6	757 aa		13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	CNPY2	Q9Y2B0	182 aa		13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373		U3KPZ7	1027 aa	Predicted RBP	13.53	□□□□□ -0.24
CPNE1-222	ENST00000473373	RANBP2	P49792	3224 aa	Known RBP	13.52	□□□□□ -0.24
CPNE1-222	ENST00000473373	FGR	P09769	529 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	SLC16A2	P36021	539 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	NT5C2	P49902	561 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	OAZ1	P54368	228 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	SYDE2	Q5VT97	1194 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	ANO1	Q5XXA6	986 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	RASGRP2	Q7LDG7	609 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	CHST13	Q8NET6	341 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	REPS2	Q8NFH8	660 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	CRISPLD2	Q9H0B8	497 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	C11orf49	Q9H6J7	331 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	ACAD9	Q9H845	621 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	RNF146	Q9NTX7	359 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	DDX20	Q9UHI6	824 aa	Known RBP	13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373	PRR12	Q9ULL5	1215 aa		13.52	□□□□□ -0.25
CPNE1-222	ENST00000473373		A0A1W2PPC1	479 aa		13.51	□□□□□ -0.25
CPNE1-222	ENST00000473373	PRAMEF19	Q5SWL8	479 aa		13.51	□□□□□ -0.25
CPNE1-222	ENST00000473373	IFIT1B	Q5T764	474 aa	Known RBP	13.51	□□□□□ -0.25
CPNE1-222	ENST00000473373	C7orf61	Q8IZ16	206 aa		13.51	□□□□□ -0.25
CPNE1-222	ENST00000473373	PNMA1	Q8ND90	353 aa		13.51	□□□□□ -0.25
CPNE1-222	ENST00000473373	TRERF1	Q96PN7	1200 aa		13.51	□□□□□ -0.25
CPNE1-222	ENST00000473373	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.51	□□□□□ -0.25
CPNE1-222	ENST00000473373	RIPK3	Q9Y572	518 aa		13.51	□□□□□ -0.25
CPNE1-222	ENST00000473373	TNKS	O95271	1327 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	KBTBD13	C9JR72	458 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	POTEB2	H3BUK9	544 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	ATP2A1	O14983	1001 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	PLA2G6	O60733	806 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	PDHB	P11177	359 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	CYBA	P13498	195 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	SART3	Q15020	963 aa	Known RBP	13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	TKFC	Q3LXA3	575 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	TTBK2	Q6IQ55	1244 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	NSMF	Q6X4W1	530 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	AGBL1	Q96MI9	1066 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	TINF2	Q9BSI4	451 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	ZSWIM5	Q9P217	1185 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	OGDHL	Q9ULD0	1010 aa		13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	DIS3	Q9Y2L1	958 aa	Known RBP	13.5	□□□□□ -0.25
CPNE1-222	ENST00000473373	PFAS	O15067	1338 aa		13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	SGSM2	O43147	1006 aa		13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	SEPT4	O43236	478 aa		13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	CENPB	P07199	599 aa	Predicted RBP	13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	RARB	P10826	455 aa		13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	PTH1R	Q03431	593 aa		13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	ZNF792	Q3KQV3	632 aa		13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	GPATCH4	Q5T3I0	446 aa	Known RBP	13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	DGKH	Q86XP1	1220 aa		13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	ARRDC4	Q8NCT1	418 aa		13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	NCOA7	Q8NI08	942 aa		13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	SENP6	Q9GZR1	1112 aa	Predicted RBP	13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	IL25	Q9H293	177 aa		13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	ANO2	Q9NQ90	1003 aa		13.49	□□□□□ -0.25
CPNE1-222	ENST00000473373	PTPDC1	A2A3K4	754 aa		13.48	□□□□□ -0.25
CPNE1-222	ENST00000473373	IFIT3	O14879	490 aa	Known RBP	13.48	□□□□□ -0.25
CPNE1-222	ENST00000473373	PARP1	P09874	1014 aa	Known RBP	13.48	□□□□□ -0.25
CPNE1-222	ENST00000473373	GOLGA8H	P0CJ92	632 aa		13.48	□□□□□ -0.25
CPNE1-222	ENST00000473373	SYN1	P17600	705 aa		13.48	□□□□□ -0.25
CPNE1-222	ENST00000473373	ZNF543	Q08ER8	600 aa		13.48	□□□□□ -0.25
CPNE1-222	ENST00000473373	GJC2	Q5T442	439 aa	Predicted RBP	13.48	□□□□□ -0.25
CPNE1-222	ENST00000473373	NOL8	Q76FK4	1167 aa	Known RBP	13.48	□□□□□ -0.25
CPNE1-222	ENST00000473373	GDF15	Q99988	308 aa		13.48	□□□□□ -0.25
CPNE1-222	ENST00000473373	RBM8A	Q9Y5S9	174 aa	Known RBP	13.48	□□□□□ -0.25
CPNE1-222	ENST00000473373	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.48	□□□□□ -0.25
CPNE1-222	ENST00000473373	ICAM1	P05362	532 aa		13.47	□□□□□ -0.25
CPNE1-222	ENST00000473373	AKR1A1	P14550	325 aa		13.47	□□□□□ -0.25
CPNE1-222	ENST00000473373	USH1G	Q495M9	461 aa		13.47	□□□□□ -0.25
CPNE1-222	ENST00000473373	ASPRV1	Q53RT3	343 aa		13.47	□□□□□ -0.25
CPNE1-222	ENST00000473373		Q7L0L9	218 aa		13.47	□□□□□ -0.25
CPNE1-222	ENST00000473373	SKAP1	Q86WV1	359 aa		13.47	□□□□□ -0.25
CPNE1-222	ENST00000473373	ENAH	Q8N8S7	591 aa	Predicted RBP	13.47	□□□□□ -0.25
CPNE1-222	ENST00000473373	TRPV1	Q8NER1	839 aa		13.47	□□□□□ -0.25
CPNE1-222	ENST00000473373	RANBP17	Q9H2T7	1088 aa	Known RBP	13.47	□□□□□ -0.25
CPNE1-222	ENST00000473373	VAT1L	Q9HCJ6	419 aa		13.47	□□□□□ -0.25
CPNE1-222	ENST00000473373	XPNPEP3	Q9NQH7	507 aa		13.47	□□□□□ -0.25
CPNE1-222	ENST00000473373	PNMA2	Q9UL42	364 aa		13.47	□□□□□ -0.25
CPNE1-222	ENST00000473373	SYNGAP1	Q96PV0	1343 aa		13.46	□□□□□ -0.25
CPNE1-222	ENST00000473373		E7EWF7	191 aa		13.46	□□□□□ -0.25
CPNE1-222	ENST00000473373	DNM1L	O00429	736 aa		13.46	□□□□□ -0.25
CPNE1-222	ENST00000473373	CYP21A2	P08686	494 aa		13.46	□□□□□ -0.25
CPNE1-222	ENST00000473373	NOV	P48745	357 aa		13.46	□□□□□ -0.25
CPNE1-222	ENST00000473373	ATN1	P54259	1190 aa	Predicted RBP	13.46	□□□□□ -0.25
CPNE1-222	ENST00000473373	WTAP	Q15007	396 aa		13.46	□□□□□ -0.25
CPNE1-222	ENST00000473373	BMP2KL	Q5H9B9	411 aa		13.46	□□□□□ -0.25
CPNE1-222	ENST00000473373	LHX8	Q68G74	356 aa		13.46	□□□□□ -0.25
CPNE1-222	ENST00000473373	RNF180	Q86T96	592 aa		13.46	□□□□□ -0.25
CPNE1-222	ENST00000473373	MSL3	Q8N5Y2	521 aa	Known RBP	13.46	□□□□□ -0.25
CPNE1-222	ENST00000473373	DEFB123	Q8N688	67 aa		13.46	□□□□□ -0.25
CPNE1-222	ENST00000473373	MPHOSPH6	Q99547	160 aa	Known RBP	13.46	□□□□□ -0.25
CPNE1-222	ENST00000473373	ESYT1	Q9BSJ8	1104 aa		13.46	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms