RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 ZNF280CQ8ND82 737 aa14.68□□□□□ -0.06
VPS13D-205ENST00000473099 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.68□□□□□ -0.06
VPS13D-205ENST00000473099 AMNQ9BXJ7 453 aa14.68□□□□□ -0.06
VPS13D-205ENST00000473099 PNMA2Q9UL42 364 aa14.68□□□□□ -0.06
VPS13D-205ENST00000473099 CLIC4Q9Y696 253 aa14.68□□□□□ -0.06
VPS13D-205ENST00000473099 A0A1W2PQ27 194 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 A0A1W2PQ64 194 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 A0A1W2PQD8 194 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 M0R2N6 131 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 USP2O75604 605 aaPredicted RBP14.67□□□□□ -0.06
VPS13D-205ENST00000473099 TOMM70O94826 608 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 LETM1O95202 739 aaPredicted RBP14.67□□□□□ -0.06
VPS13D-205ENST00000473099 PTPRAP18433 802 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 MAP3K9P80192 1104 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 ORC2Q13416 577 aaPredicted RBP14.67□□□□□ -0.06
VPS13D-205ENST00000473099 FAM83BQ5T0W9 1011 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 TYW1BQ6NUM6 668 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 CAVIN1Q6NZI2 390 aaKnown RBP14.67□□□□□ -0.06
VPS13D-205ENST00000473099 FBXO11Q86XK2 927 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 SPICE1Q8N0Z3 855 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 REXO1Q8N1G1 1221 aaKnown RBP14.67□□□□□ -0.06
VPS13D-205ENST00000473099 RBM46Q8TBY0 533 aaKnown RBP14.67□□□□□ -0.06
VPS13D-205ENST00000473099 CUL5Q93034 780 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 C12orf42Q96LP6 360 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 NUP88Q99567 741 aaPredicted RBP14.67□□□□□ -0.06
VPS13D-205ENST00000473099 NMRK2Q9NPI5 230 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 RIC8AQ9NPQ8 531 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 PRR12Q9ULL5 1215 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 CSADQ9Y600 493 aa14.67□□□□□ -0.06
VPS13D-205ENST00000473099 ADM5C9JUS6 153 aa14.66□□□□□ -0.06
VPS13D-205ENST00000473099 TOB1P50616 345 aaPredicted RBP14.66□□□□□ -0.06
VPS13D-205ENST00000473099 BACE1P56817 501 aa14.66□□□□□ -0.06
VPS13D-205ENST00000473099 PTPAQ15257 358 aa14.66□□□□□ -0.06
VPS13D-205ENST00000473099 TTC38Q5R3I4 469 aa14.66□□□□□ -0.06
VPS13D-205ENST00000473099 PRAMEF18Q5VWM3 479 aa14.66□□□□□ -0.06
VPS13D-205ENST00000473099 CCDC73Q6ZRK6 1079 aa14.66□□□□□ -0.06
VPS13D-205ENST00000473099 PGBD1Q96JS3 809 aa14.66□□□□□ -0.06
VPS13D-205ENST00000473099 FTOQ9C0B1 505 aaKnown RBP eCLIP14.66□□□□□ -0.06
VPS13D-205ENST00000473099 DDX19AQ9NUU7 478 aaKnown RBP14.66□□□□□ -0.06
VPS13D-205ENST00000473099 PCDHA6Q9UN73 950 aa14.66□□□□□ -0.06
VPS13D-205ENST00000473099 PCDHA8Q9Y5H6 950 aa14.66□□□□□ -0.06
VPS13D-205ENST00000473099 UNCXA6NJT0 531 aa14.65□□□□□ -0.06
VPS13D-205ENST00000473099 CUTAO60888 179 aa14.65□□□□□ -0.06
VPS13D-205ENST00000473099 NONOQ15233 471 aaKnown RBP eCLIP14.65□□□□□ -0.06
VPS13D-205ENST00000473099 ZYXQ15942 572 aaKnown RBP14.65□□□□□ -0.06
VPS13D-205ENST00000473099 MAP3K11Q16584 847 aa14.65□□□□□ -0.06
VPS13D-205ENST00000473099 EAPPQ56P03 285 aaPredicted RBP14.65□□□□□ -0.06
VPS13D-205ENST00000473099 CCDC183Q5T5S1 534 aa14.65□□□□□ -0.06
VPS13D-205ENST00000473099 PIK3AP1Q6ZUJ8 805 aa14.65□□□□□ -0.06
VPS13D-205ENST00000473099 PRPF38AQ8NAV1 312 aaKnown RBP14.65□□□□□ -0.06
VPS13D-205ENST00000473099 ZKSCAN4Q969J2 545 aaPredicted RBP14.65□□□□□ -0.06
VPS13D-205ENST00000473099 COA7Q96BR5 231 aa14.65□□□□□ -0.06
VPS13D-205ENST00000473099 CDCA5Q96FF9 252 aa14.65□□□□□ -0.06
VPS13D-205ENST00000473099 GLIS2Q9BZE0 524 aaPredicted RBP14.65□□□□□ -0.06
VPS13D-205ENST00000473099 RANBP17Q9H2T7 1088 aaKnown RBP14.65□□□□□ -0.06
VPS13D-205ENST00000473099 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.65□□□□□ -0.06
VPS13D-205ENST00000473099 PCDHA7Q9UN72 937 aa14.65□□□□□ -0.06
VPS13D-205ENST00000473099 PCDHA1Q9Y5I3 950 aa14.65□□□□□ -0.06
VPS13D-205ENST00000473099 POTECB2RU33 542 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 LAD1O00515 517 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 SPP2Q13103 211 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 MTMR2Q13614 643 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 GSE1Q14687 1217 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 KIAA1755Q5JYT7 1200 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 ARMC9Q7Z3E5 817 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 ANKRD13AQ8IZ07 590 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 KRI1Q8N9T8 703 aaKnown RBP14.64□□□□□ -0.07
VPS13D-205ENST00000473099 MRPS27Q92552 414 aaKnown RBP14.64□□□□□ -0.07
VPS13D-205ENST00000473099 FERMT2Q96AC1 680 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 NAP1L4Q99733 375 aaKnown RBP14.64□□□□□ -0.07
VPS13D-205ENST00000473099 SLF1Q9BQI6 1058 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 PSTPIP2Q9H939 334 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 TMOD4Q9NZQ9 345 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 PCDHB6Q9Y5E3 794 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 ZHX2Q9Y6X8 837 aa14.64□□□□□ -0.07
VPS13D-205ENST00000473099 PPP1R11O60927 126 aaPredicted RBP14.63□□□□□ -0.07
VPS13D-205ENST00000473099 VCAM1P19320 739 aa14.63□□□□□ -0.07
VPS13D-205ENST00000473099 CMA1P23946 247 aa14.63□□□□□ -0.07
VPS13D-205ENST00000473099 AP3B2Q13367 1082 aa14.63□□□□□ -0.07
VPS13D-205ENST00000473099 SH3D19Q5HYK7 790 aa14.63□□□□□ -0.07
VPS13D-205ENST00000473099 CCDC84Q86UT8 332 aaPredicted RBP14.63□□□□□ -0.07
VPS13D-205ENST00000473099 CCAR1Q8IX12 1150 aaKnown RBP14.63□□□□□ -0.07
VPS13D-205ENST00000473099 ZNF579Q8NAF0 562 aaKnown RBP14.63□□□□□ -0.07
VPS13D-205ENST00000473099 KIFC2Q96AC6 838 aa14.63□□□□□ -0.07
VPS13D-205ENST00000473099 TMEM63CQ9P1W3 806 aa14.63□□□□□ -0.07
VPS13D-205ENST00000473099 SNCAIPQ9Y6H5 919 aa14.63□□□□□ -0.07
VPS13D-205ENST00000473099 ABCB11O95342 1321 aa14.63□□□□□ -0.07
VPS13D-205ENST00000473099 A0A0G2JMZ2 1700 aa14.62□□□□□ -0.07
VPS13D-205ENST00000473099 FOSP01100 380 aaPredicted RBP14.62□□□□□ -0.07
VPS13D-205ENST00000473099 PTPREP23469 700 aa14.62□□□□□ -0.07
VPS13D-205ENST00000473099 CLK2P49760 499 aaKnown RBP14.62□□□□□ -0.07
VPS13D-205ENST00000473099 APLP1P51693 650 aa14.62□□□□□ -0.07
VPS13D-205ENST00000473099 ZNF445P59923 1031 aa14.62□□□□□ -0.07
VPS13D-205ENST00000473099 ATP2C1P98194 919 aaPredicted RBP14.62□□□□□ -0.07
VPS13D-205ENST00000473099 FAM160A1Q05DH4 1040 aa14.62□□□□□ -0.07
VPS13D-205ENST00000473099 VGLL4Q14135 290 aa14.62□□□□□ -0.07
VPS13D-205ENST00000473099 EARS2Q5JPH6 523 aaKnown RBP14.62□□□□□ -0.07
VPS13D-205ENST00000473099 ARL6IP4Q66PJ3 421 aaKnown RBP14.62□□□□□ -0.07
VPS13D-205ENST00000473099 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.62□□□□□ -0.07
VPS13D-205ENST00000473099 NEK8Q86SG6 692 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms