RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 ROBO3Q96MS0 1386 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.28□□□□□ -1.08
HDAC1-204ENST00000471488 ZNF316A6NFI3 1004 aaPredicted RBP8.28□□□□□ -1.08
HDAC1-204ENST00000471488 EPOPA6NHQ4 379 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 KIF28PB7ZC32 967 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 GOLIM4O00461 696 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 DYNC1LI2O43237 492 aaPredicted RBP8.28□□□□□ -1.08
HDAC1-204ENST00000471488 PRKAB2O43741 272 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 TLL1O43897 1013 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 ZEB2O60315 1214 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 CYP2C9P11712 490 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 ACTN1P12814 892 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 PDE6AP16499 860 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 CDK8P49336 464 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 GJA9P57773 515 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 GABPAQ06546 454 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 IKQ13123 557 aaPredicted RBP8.28□□□□□ -1.08
HDAC1-204ENST00000471488 TTLL4Q14679 1199 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 ARMCX2Q7L311 632 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 TLK2Q86UE8 772 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 SIAH1Q8IUQ4 282 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 CCDC144CPQ8IYA2 1237 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 GDPD5Q8WTR4 605 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 PPP1R13LQ8WUF5 828 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 EAF2Q96CJ1 260 aaPredicted RBP8.28□□□□□ -1.08
HDAC1-204ENST00000471488 CRBNQ96SW2 442 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 RIOK1Q9BRS2 568 aaKnown RBP8.28□□□□□ -1.08
HDAC1-204ENST00000471488 ZBED2Q9BTP6 218 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 WNT8AQ9H1J5 351 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 ABHD16BQ9H3Z7 469 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 DCP1AQ9NPI6 582 aaPredicted RBP8.28□□□□□ -1.08
HDAC1-204ENST00000471488 GPR108Q9NPR9 543 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 ZNF214Q9UL59 606 aaPredicted RBP8.28□□□□□ -1.08
HDAC1-204ENST00000471488 DDX49Q9Y6V7 483 aaKnown RBP8.28□□□□□ -1.08
HDAC1-204ENST00000471488 REV3LO60673 3130 aa8.28□□□□□ -1.08
HDAC1-204ENST00000471488 IPO8O15397 1037 aaKnown RBP8.27□□□□□ -1.09
HDAC1-204ENST00000471488 GPR37L1O60883 481 aa8.27□□□□□ -1.09
HDAC1-204ENST00000471488 MBD4O95243 580 aa8.27□□□□□ -1.09
HDAC1-204ENST00000471488 CD4P01730 458 aa8.27□□□□□ -1.09
HDAC1-204ENST00000471488 CST5P28325 142 aaPredicted RBP8.27□□□□□ -1.09
HDAC1-204ENST00000471488 CNTN2Q02246 1040 aa8.27□□□□□ -1.09
HDAC1-204ENST00000471488 FSCN1Q16658 493 aaKnown RBP8.27□□□□□ -1.09
HDAC1-204ENST00000471488 SLFNL1Q499Z3 407 aa8.27□□□□□ -1.09
HDAC1-204ENST00000471488 MSL3Q8N5Y2 521 aaKnown RBP8.27□□□□□ -1.09
HDAC1-204ENST00000471488 ZNF512BQ96KM6 892 aaPredicted RBP8.27□□□□□ -1.09
HDAC1-204ENST00000471488 NOC4LQ9BVI4 516 aaKnown RBP8.27□□□□□ -1.09
HDAC1-204ENST00000471488 KANSL2Q9H9L4 492 aa8.27□□□□□ -1.09
HDAC1-204ENST00000471488 C11orf16Q9NQ32 467 aa8.27□□□□□ -1.09
HDAC1-204ENST00000471488 TRMT13Q9NUP7 481 aaKnown RBP8.27□□□□□ -1.09
HDAC1-204ENST00000471488 COG6Q9Y2V7 657 aa8.27□□□□□ -1.09
HDAC1-204ENST00000471488 ARIH1Q9Y4X5 557 aaPredicted RBP8.27□□□□□ -1.09
HDAC1-204ENST00000471488 MYH8P13535 1937 aa8.27□□□□□ -1.09
HDAC1-204ENST00000471488 USP17L12C9JPN9 530 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 USP17L21D6R901 530 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 CABYRO75952 493 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 MYL3P08590 195 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 TRIM27P14373 513 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 KCNA5P22460 613 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 KCNJ6P48051 423 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 RARSP54136 660 aaKnown RBP8.26□□□□□ -1.09
HDAC1-204ENST00000471488 GRB10Q13322 594 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 TTF1Q15361 905 aaPredicted RBP8.26□□□□□ -1.09
HDAC1-204ENST00000471488 SPRED2Q7Z698 418 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 TMCO2Q7Z6W1 182 aaPredicted RBP8.26□□□□□ -1.09
HDAC1-204ENST00000471488 RETREG2Q8NC44 543 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 CCDC17Q96LX7 622 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 UPF3AQ9H1J1 476 aaKnown RBP8.26□□□□□ -1.09
HDAC1-204ENST00000471488 MKNK2Q9HBH9 465 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 IL1RAPL2Q9NP60 686 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 CD320Q9NPF0 282 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 GPHNQ9NQX3 736 aaPredicted RBP8.26□□□□□ -1.09
HDAC1-204ENST00000471488 CLIP2Q9UDT6 1046 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 NOD1Q9Y239 953 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 EXOC6BQ9Y2D4 811 aa8.26□□□□□ -1.09
HDAC1-204ENST00000471488 CHD7Q9P2D1 2997 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 ARHGEF15O94989 841 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 ATP8B2P98198 1209 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 TAP1Q03518 808 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 FAM117BQ6P1L5 589 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 MAMDC4Q6UXC1 1216 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 HERC6Q8IVU3 1022 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 ITPRIPQ8IWB1 547 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 FBXO16Q8IX29 292 aaPredicted RBP8.25□□□□□ -1.09
HDAC1-204ENST00000471488 GJD3Q8N144 294 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 TMEM57Q8N5G2 664 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 PRPF38AQ8NAV1 312 aaKnown RBP8.25□□□□□ -1.09
HDAC1-204ENST00000471488 REPS2Q8NFH8 660 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 SNX27Q96L92 541 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 SLC9A7Q96T83 725 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 PDGFCQ9NRA1 345 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 FBXO40Q9UH90 709 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 ADAMTS5Q9UNA0 930 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 SLC4A4Q9Y6R1 1079 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 ASTN1O14525 1302 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 ZNF536O15090 1300 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 TNKSO95271 1327 aa8.25□□□□□ -1.09
HDAC1-204ENST00000471488 PRRC2BQ5JSZ5 2229 aaKnown RBP8.25□□□□□ -1.09
HDAC1-204ENST00000471488 DNAJC25-GNG10A0A024R161 153 aa8.24□□□□□ -1.09
HDAC1-204ENST00000471488 MINDY4BA8MYZ0 360 aa8.24□□□□□ -1.09
HDAC1-204ENST00000471488 PRR33A8MZF0 331 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms