RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 BRF1Q92994 677 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 BACH2Q9BYV9 841 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 MROH8Q9H579 483 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 UPF2Q9HAU5 1272 aaKnown RBP13.92□□□□□ -0.18
VPS13D-204ENST00000469054 CWC22Q9HCG8 908 aaKnown RBP13.92□□□□□ -0.18
VPS13D-204ENST00000469054 PDRG1Q9NUG6 133 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 BRPF3Q9ULD4 1205 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 RIPK3Q9Y572 518 aa13.92□□□□□ -0.18
VPS13D-204ENST00000469054 KLF18A0A0U1RQI7 1052 aa13.91□□□□□ -0.18
VPS13D-204ENST00000469054 ZBTB43O43298 467 aa13.91□□□□□ -0.18
VPS13D-204ENST00000469054 RCAN1P53805 252 aa13.91□□□□□ -0.18
VPS13D-204ENST00000469054 PRKCZQ05513 592 aa13.91□□□□□ -0.18
VPS13D-204ENST00000469054 APOBRQ0VD83 1088 aa13.91□□□□□ -0.18
VPS13D-204ENST00000469054 MICU3Q86XE3 530 aa13.91□□□□□ -0.18
VPS13D-204ENST00000469054 AGBL1Q96MI9 1066 aa13.91□□□□□ -0.18
VPS13D-204ENST00000469054 JMJD4Q9H9V9 463 aa13.91□□□□□ -0.18
VPS13D-204ENST00000469054 VAT1LQ9HCJ6 419 aa13.91□□□□□ -0.18
VPS13D-204ENST00000469054 GJD2Q9UKL4 321 aa13.91□□□□□ -0.18
VPS13D-204ENST00000469054 PNMA2Q9UL42 364 aa13.91□□□□□ -0.18
VPS13D-204ENST00000469054 PTPN22Q9Y2R2 807 aa13.91□□□□□ -0.18
VPS13D-204ENST00000469054 IVNS1ABPQ9Y6Y0 642 aa13.91□□□□□ -0.18
VPS13D-204ENST00000469054 RLFQ13129 1914 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 STRNO43815 780 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 DHX16O60231 1041 aaKnown RBP13.9□□□□□ -0.18
VPS13D-204ENST00000469054 ICAM1P05362 532 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 PTPREP23469 700 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 SMARCA1P28370 1054 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 SLC4A3P48751 1232 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 RBM25P49756 843 aaKnown RBP13.9□□□□□ -0.18
VPS13D-204ENST00000469054 FLT3LGP49771 235 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 EVCP57679 992 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 TOB2Q14106 344 aaPredicted RBP13.9□□□□□ -0.18
VPS13D-204ENST00000469054 FBXO46Q6PJ61 603 aaPredicted RBP13.9□□□□□ -0.18
VPS13D-204ENST00000469054 NBPF11Q86T75 865 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 RAB11FIP4Q86YS3 637 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 CCDC144CPQ8IYA2 1237 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 NUDT12Q9BQG2 462 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 LZTS2Q9BRK4 669 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 MCOLN1Q9GZU1 580 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 ALDH8A1Q9H2A2 487 aaPredicted RBP13.9□□□□□ -0.18
VPS13D-204ENST00000469054 RIOX1Q9H6W3 641 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 NAP1L2Q9ULW6 460 aaPredicted RBP13.9□□□□□ -0.18
VPS13D-204ENST00000469054 GABRQQ9UN88 632 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 CASP8AP2Q9UKL3 1982 aa13.9□□□□□ -0.18
VPS13D-204ENST00000469054 SLC15A5A6NIM6 579 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 CYTH3O43739 400 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 GRB14Q14449 540 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 CDC37Q16543 378 aaPredicted RBP13.89□□□□□ -0.19
VPS13D-204ENST00000469054 RTN1Q16799 776 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 SLC35G1Q2M3R5 365 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 TKFCQ3LXA3 575 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 MORN1Q5T089 497 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 CHST13Q8NET6 341 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 RAET1EQ8TD07 263 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 SOCS4Q8WXH5 440 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 MTMR8Q96EF0 704 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 RBM28Q9NW13 759 aaKnown RBP13.89□□□□□ -0.19
VPS13D-204ENST00000469054 FBXO40Q9UH90 709 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 CCPG1Q9ULG6 757 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 PTCH2Q9Y6C5 1203 aa13.89□□□□□ -0.19
VPS13D-204ENST00000469054 GOLGA8AA7E2F4 631 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 GOLGA8BA8MQT2 603 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 ZBTB5O15062 677 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 PLEKHA8P1O95397 391 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 FCER1AP12319 257 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 ALAS1P13196 640 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 METAP2P50579 478 aaKnown RBP eCLIP13.88□□□□□ -0.19
VPS13D-204ENST00000469054 NEK4P51957 841 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 MKRN4PQ13434 485 aaPredicted RBP13.88□□□□□ -0.19
VPS13D-204ENST00000469054 IRF5Q13568 498 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 PPP2R5BQ15173 497 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 QRICH1Q2TAL8 776 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 ABRAQ8N0Z2 381 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 SRBD1Q8N5C6 995 aaKnown RBP13.88□□□□□ -0.19
VPS13D-204ENST00000469054 USP6NLQ92738 828 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 TRERF1Q96PN7 1200 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 KIF2CQ99661 725 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 SPZ1Q9BXG8 430 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 HPS5Q9UPZ3 1129 aa13.88□□□□□ -0.19
VPS13D-204ENST00000469054 A0A0G2JMZ2 1700 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 CCDC196A0A1B0GTZ2 297 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 TAL1P17542 331 aaPredicted RBP13.87□□□□□ -0.19
VPS13D-204ENST00000469054 CYP2B6P20813 491 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 ADORA2AP29274 412 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 PDIA3P30101 505 aaKnown RBP13.87□□□□□ -0.19
VPS13D-204ENST00000469054 RGS2P41220 211 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 MAP2K5Q13163 448 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 ANKRD1Q15327 319 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 TMTC3Q6ZXV5 915 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.87□□□□□ -0.19
VPS13D-204ENST00000469054 HOMER1Q86YM7 354 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 CMTR1Q8N1G2 835 aaKnown RBP13.87□□□□□ -0.19
VPS13D-204ENST00000469054 ZNF274Q96GC6 653 aaPredicted RBP13.87□□□□□ -0.19
VPS13D-204ENST00000469054 PIGSQ96S52 555 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 MMP19Q99542 508 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 LARP6Q9BRS8 491 aaKnown RBP13.87□□□□□ -0.19
VPS13D-204ENST00000469054 ACAD9Q9H845 621 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 HOMER2Q9NSB8 354 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 RNF146Q9NTX7 359 aa13.87□□□□□ -0.19
VPS13D-204ENST00000469054 FAM217BQ9NTX9 383 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms