RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 SNAP25P60880 206 aa29.01■■■□□ 2.23
PTCH1-210ENST00000468211 IRX5P78411 483 aaPredicted RBP29.01■■■□□ 2.23
PTCH1-210ENST00000468211 TLE2Q04725 743 aa29.01■■■□□ 2.23
PTCH1-210ENST00000468211 ZNF589Q86UQ0 364 aaPredicted RBP29.01■■■□□ 2.23
PTCH1-210ENST00000468211 TRIM43Q96BQ3 446 aaPredicted RBP29.01■■■□□ 2.23
PTCH1-210ENST00000468211 CDKN2AIPQ9NXV6 580 aaPredicted RBP29.01■■■□□ 2.23
PTCH1-210ENST00000468211 FBXO40Q9UH90 709 aa29.01■■■□□ 2.23
PTCH1-210ENST00000468211 FAM184BQ9ULE4 1060 aa29.01■■■□□ 2.23
PTCH1-210ENST00000468211 A0A1W2PQ45 241 aaPredicted RBP29■■■□□ 2.23
PTCH1-210ENST00000468211 A0A1W2PQY0 241 aa29■■■□□ 2.23
PTCH1-210ENST00000468211 NOVP48745 357 aa29■■■□□ 2.23
PTCH1-210ENST00000468211 CNTN2Q02246 1040 aa29■■■□□ 2.23
PTCH1-210ENST00000468211 NMIQ13287 307 aaPredicted RBP29■■■□□ 2.23
PTCH1-210ENST00000468211 MCMDC2Q4G0Z9 681 aa29■■■□□ 2.23
PTCH1-210ENST00000468211 RCSD1Q6JBY9 416 aa29■■■□□ 2.23
PTCH1-210ENST00000468211 FAM160B2Q86V87 743 aa29■■■□□ 2.23
PTCH1-210ENST00000468211 CHURC1Q8WUH1 139 aa29■■■□□ 2.23
PTCH1-210ENST00000468211 LCTP09848 1927 aa29■■■□□ 2.23
PTCH1-210ENST00000468211 MYADML2A6NDP7 307 aa28.99■■■□□ 2.23
PTCH1-210ENST00000468211 ORC4O43929 436 aa28.99■■■□□ 2.23
PTCH1-210ENST00000468211 FDX1P10109 184 aa28.99■■■□□ 2.23
PTCH1-210ENST00000468211 IKQ13123 557 aaPredicted RBP28.99■■■□□ 2.23
PTCH1-210ENST00000468211 ACVR2BQ13705 512 aa28.99■■■□□ 2.23
PTCH1-210ENST00000468211 SMC5Q8IY18 1101 aa28.99■■■□□ 2.23
PTCH1-210ENST00000468211 BADQ92934 168 aa28.99■■■□□ 2.23
PTCH1-210ENST00000468211 MTMR7Q9Y216 660 aa28.99■■■□□ 2.23
PTCH1-210ENST00000468211 PLA2G6O60733 806 aa28.98■■■□□ 2.23
PTCH1-210ENST00000468211 B4GALNT3Q6L9W6 998 aa28.98■■■□□ 2.23
PTCH1-210ENST00000468211 KLHDC9Q8NEP7 349 aa28.98■■■□□ 2.23
PTCH1-210ENST00000468211 RNF146Q9NTX7 359 aa28.98■■■□□ 2.23
PTCH1-210ENST00000468211 PRR12Q9ULL5 1215 aa28.98■■■□□ 2.23
PTCH1-210ENST00000468211 IGHDP01880 384 aa28.97■■■□□ 2.23
PTCH1-210ENST00000468211 HSPD1P10809 573 aaKnown RBP28.97■■■□□ 2.23
PTCH1-210ENST00000468211 ITGB8P26012 769 aa28.97■■■□□ 2.23
PTCH1-210ENST00000468211 PPP4R3BQ5MIZ7 849 aa28.97■■■□□ 2.23
PTCH1-210ENST00000468211 CCSAPQ6IQ19 270 aaPredicted RBP28.97■■■□□ 2.23
PTCH1-210ENST00000468211 CCDC174Q6PII3 467 aa28.97■■■□□ 2.23
PTCH1-210ENST00000468211 ARMCX2Q7L311 632 aa28.97■■■□□ 2.23
PTCH1-210ENST00000468211 CCDC144CPQ8IYA2 1237 aa28.97■■■□□ 2.23
PTCH1-210ENST00000468211 FAM133AQ8N9E0 248 aa28.97■■■□□ 2.23
PTCH1-210ENST00000468211 KATNBL1Q9H079 304 aa28.97■■■□□ 2.23
PTCH1-210ENST00000468211 ACAD9Q9H845 621 aa28.97■■■□□ 2.23
PTCH1-210ENST00000468211 A1CFQ9NQ94 594 aaKnown RBP28.97■■■□□ 2.23
PTCH1-210ENST00000468211 LRRC37A2A6NM11 1700 aa28.97■■■□□ 2.23
PTCH1-210ENST00000468211 ACLYP53396 1101 aa28.96■■■□□ 2.23
PTCH1-210ENST00000468211 CCDC144BQ3MJ40 725 aa28.96■■■□□ 2.23
PTCH1-210ENST00000468211 C9orf50Q5SZB4 431 aa28.96■■■□□ 2.23
PTCH1-210ENST00000468211 TSEN34Q9BSV6 310 aaKnown RBP28.96■■■□□ 2.23
PTCH1-210ENST00000468211 MTMR10Q9NXD2 777 aa28.96■■■□□ 2.23
PTCH1-210ENST00000468211 DDX49Q9Y6V7 483 aaKnown RBP28.96■■■□□ 2.23
PTCH1-210ENST00000468211 SOWAHBA6NEL2 793 aa28.95■■■□□ 2.22
PTCH1-210ENST00000468211 TRIM6-TRIM34B2RNG4 842 aa28.95■■■□□ 2.22
PTCH1-210ENST00000468211 DUSP11O75319 330 aaKnown RBP28.95■■■□□ 2.22
PTCH1-210ENST00000468211 HAND2P61296 217 aa28.95■■■□□ 2.22
PTCH1-210ENST00000468211 SHHQ15465 462 aa28.95■■■□□ 2.22
PTCH1-210ENST00000468211 KCNA10Q16322 511 aa28.95■■■□□ 2.22
PTCH1-210ENST00000468211 RRP12Q5JTH9 1297 aaKnown RBP28.95■■■□□ 2.22
PTCH1-210ENST00000468211 TTBK2Q6IQ55 1244 aa28.95■■■□□ 2.22
PTCH1-210ENST00000468211 TRERF1Q96PN7 1200 aa28.95■■■□□ 2.22
PTCH1-210ENST00000468211 ABHD16BQ9H3Z7 469 aa28.95■■■□□ 2.22
PTCH1-210ENST00000468211 TOMM22Q9NS69 142 aa28.95■■■□□ 2.22
PTCH1-210ENST00000468211 POTEB2H3BUK9 544 aa28.94■■■□□ 2.22
PTCH1-210ENST00000468211 PQBP1O60828 265 aaKnown RBP28.94■■■□□ 2.22
PTCH1-210ENST00000468211 ALAS1P13196 640 aa28.94■■■□□ 2.22
PTCH1-210ENST00000468211 MUM1L1Q5H9M0 696 aa28.94■■■□□ 2.22
PTCH1-210ENST00000468211 RILPL2Q969X0 211 aa28.94■■■□□ 2.22
PTCH1-210ENST00000468211 ASTN1O14525 1302 aa28.94■■■□□ 2.22
PTCH1-210ENST00000468211 CCDC171Q6TFL3 1326 aa28.94■■■□□ 2.22
PTCH1-210ENST00000468211 CLTBP09497 229 aa28.93■■■□□ 2.22
PTCH1-210ENST00000468211 TICAM2Q86XR7 235 aa28.93■■■□□ 2.22
PTCH1-210ENST00000468211 PLEKHM2Q8IWE5 1019 aa28.93■■■□□ 2.22
PTCH1-210ENST00000468211 TMEM47Q9BQJ4 181 aa28.93■■■□□ 2.22
PTCH1-210ENST00000468211 RWDD1Q9H446 243 aaPredicted RBP28.93■■■□□ 2.22
PTCH1-210ENST00000468211 ZMYM6O95789 1325 aa28.93■■■□□ 2.22
PTCH1-210ENST00000468211 SLC16A2P36021 539 aa28.92■■■□□ 2.22
PTCH1-210ENST00000468211 AAMPQ13685 434 aa28.92■■■□□ 2.22
PTCH1-210ENST00000468211 CCDC96Q2M329 555 aa28.92■■■□□ 2.22
PTCH1-210ENST00000468211 TKFCQ3LXA3 575 aa28.92■■■□□ 2.22
PTCH1-210ENST00000468211 EXOC6Q8TAG9 804 aa28.92■■■□□ 2.22
PTCH1-210ENST00000468211 UPF3AQ9H1J1 476 aaKnown RBP28.92■■■□□ 2.22
PTCH1-210ENST00000468211 STARD7Q9NQZ5 370 aa28.92■■■□□ 2.22
PTCH1-210ENST00000468211 C6orf222P0C671 652 aaPredicted RBP28.91■■■□□ 2.22
PTCH1-210ENST00000468211 CHD1LQ86WJ1 897 aa28.91■■■□□ 2.22
PTCH1-210ENST00000468211 DCAF4Q8WV16 495 aa28.91■■■□□ 2.22
PTCH1-210ENST00000468211 LAMA4Q16363 1823 aa28.9■■■□□ 2.22
PTCH1-210ENST00000468211 C11orf97A0A1B0GVM6 126 aaPredicted RBP28.9■■■□□ 2.22
PTCH1-210ENST00000468211 MOXD2PA6NHM9 499 aa28.9■■■□□ 2.22
PTCH1-210ENST00000468211 KIAA0355O15063 1070 aa28.9■■■□□ 2.22
PTCH1-210ENST00000468211 CTAGE5O15320 804 aa28.9■■■□□ 2.22
PTCH1-210ENST00000468211 TOP1P11387 765 aaKnown RBP28.9■■■□□ 2.22
PTCH1-210ENST00000468211 SDSP20132 328 aa28.9■■■□□ 2.22
PTCH1-210ENST00000468211 CST5P28325 142 aaPredicted RBP28.9■■■□□ 2.22
PTCH1-210ENST00000468211 EPHB4P54760 987 aa28.9■■■□□ 2.22
PTCH1-210ENST00000468211 GJA9P57773 515 aa28.9■■■□□ 2.22
PTCH1-210ENST00000468211 FAAP100Q0VG06 881 aa28.9■■■□□ 2.22
PTCH1-210ENST00000468211 TBC1D10CQ8IV04 446 aa28.9■■■□□ 2.22
PTCH1-210ENST00000468211 PURBQ96QR8 312 aaKnown RBP28.9■■■□□ 2.22
PTCH1-210ENST00000468211 TCP11L1Q9NUJ3 509 aa28.9■■■□□ 2.22
PTCH1-210ENST00000468211 FRMPD2Q68DX3 1309 aaPredicted RBP28.9■■■□□ 2.22
PTCH1-210ENST00000468211 PTGS1P23219 599 aa28.89■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms