RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 TRIM43BA6NCK2 446 aa22.68■■□□□ 1.22
COL9A3-206ENST00000466532 ACVR2BQ13705 512 aa22.68■■□□□ 1.22
COL9A3-206ENST00000466532 KCTD1Q719H9 257 aa22.68■■□□□ 1.22
COL9A3-206ENST00000466532 TRIM43Q96BQ3 446 aaPredicted RBP22.68■■□□□ 1.22
COL9A3-206ENST00000466532 FAM227BQ96M60 508 aa22.68■■□□□ 1.22
COL9A3-206ENST00000466532 TSEN34Q9BSV6 310 aaKnown RBP22.68■■□□□ 1.22
COL9A3-206ENST00000466532 ACAD9Q9H845 621 aa22.68■■□□□ 1.22
COL9A3-206ENST00000466532 LAMA4Q16363 1823 aa22.68■■□□□ 1.22
COL9A3-206ENST00000466532 ZNF536O15090 1300 aa22.67■■□□□ 1.22
COL9A3-206ENST00000466532 A0A0D9SFI3 127 aa22.67■■□□□ 1.22
COL9A3-206ENST00000466532 DUSP11O75319 330 aaKnown RBP22.67■■□□□ 1.22
COL9A3-206ENST00000466532 ACLYP53396 1101 aa22.67■■□□□ 1.22
COL9A3-206ENST00000466532 ALX1Q15699 326 aa22.67■■□□□ 1.22
COL9A3-206ENST00000466532 MCMDC2Q4G0Z9 681 aa22.67■■□□□ 1.22
COL9A3-206ENST00000466532 RCSD1Q6JBY9 416 aa22.67■■□□□ 1.22
COL9A3-206ENST00000466532 ARMCX2Q7L311 632 aa22.67■■□□□ 1.22
COL9A3-206ENST00000466532 AGBL1Q96MI9 1066 aa22.67■■□□□ 1.22
COL9A3-206ENST00000466532 ABHD16BQ9H3Z7 469 aa22.67■■□□□ 1.22
COL9A3-206ENST00000466532 RNF146Q9NTX7 359 aa22.67■■□□□ 1.22
COL9A3-206ENST00000466532 MTMR10Q9NXD2 777 aa22.67■■□□□ 1.22
COL9A3-206ENST00000466532 MTMR7Q9Y216 660 aa22.67■■□□□ 1.22
COL9A3-206ENST00000466532 LAMA2P24043 3122 aaKnown RBP22.66■■□□□ 1.22
COL9A3-206ENST00000466532 ORC4O43929 436 aa22.66■■□□□ 1.22
COL9A3-206ENST00000466532 PLA2G6O60733 806 aa22.66■■□□□ 1.22
COL9A3-206ENST00000466532 PQBP1O60828 265 aaKnown RBP22.66■■□□□ 1.22
COL9A3-206ENST00000466532 CLTBP09497 229 aa22.66■■□□□ 1.22
COL9A3-206ENST00000466532 CNTN2Q02246 1040 aa22.66■■□□□ 1.22
COL9A3-206ENST00000466532 RASGRP2Q7LDG7 609 aa22.66■■□□□ 1.22
COL9A3-206ENST00000466532 SLC17A8Q8NDX2 589 aa22.66■■□□□ 1.22
COL9A3-206ENST00000466532 KLHDC9Q8NEP7 349 aa22.66■■□□□ 1.22
COL9A3-206ENST00000466532 LNPKQ9C0E8 428 aa22.66■■□□□ 1.22
COL9A3-206ENST00000466532 STARD7Q9NQZ5 370 aa22.66■■□□□ 1.22
COL9A3-206ENST00000466532 TOMM22Q9NS69 142 aa22.66■■□□□ 1.22
COL9A3-206ENST00000466532 MOXD2PA6NHM9 499 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 TRIM6-TRIM34B2RNG4 842 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 POTEB2H3BUK9 544 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 FGAP02671 866 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 FGRP09769 529 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 ALAS1P13196 640 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 SHHQ15465 462 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 KCNA10Q16322 511 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 TKFCQ3LXA3 575 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 CCDC144BQ3MJ40 725 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 CCDC174Q6PII3 467 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 CCDC144CPQ8IYA2 1237 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 NUP133Q8WUM0 1156 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 YTHDC1Q96MU7 727 aaKnown RBP22.65■■□□□ 1.22
COL9A3-206ENST00000466532 A1CFQ9NQ94 594 aaKnown RBP22.65■■□□□ 1.22
COL9A3-206ENST00000466532 PRR12Q9ULL5 1215 aa22.65■■□□□ 1.22
COL9A3-206ENST00000466532 MYADML2A6NDP7 307 aa22.64■■□□□ 1.21
COL9A3-206ENST00000466532 ADCY6O43306 1168 aa22.64■■□□□ 1.21
COL9A3-206ENST00000466532 C6orf222P0C671 652 aaPredicted RBP22.64■■□□□ 1.21
COL9A3-206ENST00000466532 NOVP48745 357 aa22.64■■□□□ 1.21
COL9A3-206ENST00000466532 SNAP25P60880 206 aa22.64■■□□□ 1.21
COL9A3-206ENST00000466532 NMIQ13287 307 aaPredicted RBP22.64■■□□□ 1.21
COL9A3-206ENST00000466532 RRP12Q5JTH9 1297 aaKnown RBP22.64■■□□□ 1.21
COL9A3-206ENST00000466532 C9orf50Q5SZB4 431 aa22.64■■□□□ 1.21
COL9A3-206ENST00000466532 TICAM2Q86XR7 235 aa22.64■■□□□ 1.21
COL9A3-206ENST00000466532 FAM133AQ8N9E0 248 aa22.64■■□□□ 1.21
COL9A3-206ENST00000466532 TRERF1Q96PN7 1200 aa22.64■■□□□ 1.21
COL9A3-206ENST00000466532 HSPD1P10809 573 aaKnown RBP22.63■■□□□ 1.21
COL9A3-206ENST00000466532 IRX5P78411 483 aaPredicted RBP22.63■■□□□ 1.21
COL9A3-206ENST00000466532 AAMPQ13685 434 aa22.63■■□□□ 1.21
COL9A3-206ENST00000466532 CCDC96Q2M329 555 aa22.63■■□□□ 1.21
COL9A3-206ENST00000466532 CCSAPQ6IQ19 270 aaPredicted RBP22.63■■□□□ 1.21
COL9A3-206ENST00000466532 DCAF4Q8WV16 495 aa22.63■■□□□ 1.21
COL9A3-206ENST00000466532 RILPL2Q969X0 211 aa22.63■■□□□ 1.21
COL9A3-206ENST00000466532 SPC25Q9HBM1 224 aa22.63■■□□□ 1.21
COL9A3-206ENST00000466532 STXBP5LQ9Y2K9 1186 aa22.63■■□□□ 1.21
COL9A3-206ENST00000466532 ZMYM6O95789 1325 aa22.62■■□□□ 1.21
COL9A3-206ENST00000466532 KIAA0355O15063 1070 aa22.62■■□□□ 1.21
COL9A3-206ENST00000466532 ITGB8P26012 769 aa22.62■■□□□ 1.21
COL9A3-206ENST00000466532 CST5P28325 142 aaPredicted RBP22.62■■□□□ 1.21
COL9A3-206ENST00000466532 B4GALNT3Q6L9W6 998 aa22.62■■□□□ 1.21
COL9A3-206ENST00000466532 ZNF589Q86UQ0 364 aaPredicted RBP22.62■■□□□ 1.21
COL9A3-206ENST00000466532 PCSK9Q8NBP7 692 aaKnown RBP22.62■■□□□ 1.21
COL9A3-206ENST00000466532 KATNBL1Q9H079 304 aa22.62■■□□□ 1.21
COL9A3-206ENST00000466532 RWDD1Q9H446 243 aaPredicted RBP22.62■■□□□ 1.21
COL9A3-206ENST00000466532 MYH6P13533 1939 aa22.62■■□□□ 1.21
COL9A3-206ENST00000466532 CCDC171Q6TFL3 1326 aa22.61■■□□□ 1.21
COL9A3-206ENST00000466532 SOWAHBA6NEL2 793 aa22.61■■□□□ 1.21
COL9A3-206ENST00000466532 DCDC2CA8MYV0 355 aa22.61■■□□□ 1.21
COL9A3-206ENST00000466532 RAG1P15918 1043 aa22.61■■□□□ 1.21
COL9A3-206ENST00000466532 GJA9P57773 515 aa22.61■■□□□ 1.21
COL9A3-206ENST00000466532 FAM109BQ6ICB4 259 aaPredicted RBP22.61■■□□□ 1.21
COL9A3-206ENST00000466532 ANKRD33Q7Z3H0 272 aa22.61■■□□□ 1.21
COL9A3-206ENST00000466532 SMC5Q8IY18 1101 aa22.61■■□□□ 1.21
COL9A3-206ENST00000466532 GLT1D1Q96MS3 346 aa22.61■■□□□ 1.21
COL9A3-206ENST00000466532 TOX2Q96NM4 488 aa22.61■■□□□ 1.21
COL9A3-206ENST00000466532 UPF3AQ9H1J1 476 aaKnown RBP22.61■■□□□ 1.21
COL9A3-206ENST00000466532 TMEM39AQ9NV64 488 aa22.61■■□□□ 1.21
COL9A3-206ENST00000466532 ASB14A6NK59 587 aa22.6■■□□□ 1.21
COL9A3-206ENST00000466532 ASGR1P07306 291 aa22.6■■□□□ 1.21
COL9A3-206ENST00000466532 TOP1P11387 765 aaKnown RBP22.6■■□□□ 1.21
COL9A3-206ENST00000466532 HAND2P61296 217 aa22.6■■□□□ 1.21
COL9A3-206ENST00000466532 FAAP100Q0VG06 881 aa22.6■■□□□ 1.21
COL9A3-206ENST00000466532 MUM1L1Q5H9M0 696 aa22.6■■□□□ 1.21
COL9A3-206ENST00000466532 TMEM47Q9BQJ4 181 aa22.6■■□□□ 1.21
COL9A3-206ENST00000466532 CCPG1Q9ULG6 757 aa22.6■■□□□ 1.21
COL9A3-206ENST00000466532 ELP1O95163 1332 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms