RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 SLC25A27O95847 323 aa11.77□□□□□ -0.53
USP39-212ENST00000465514 TAP1Q03518 808 aa11.77□□□□□ -0.53
USP39-212ENST00000465514 GRB10Q13322 594 aa11.77□□□□□ -0.53
USP39-212ENST00000465514 TTLL4Q14679 1199 aa11.77□□□□□ -0.53
USP39-212ENST00000465514 KCTD2Q14681 263 aa11.77□□□□□ -0.53
USP39-212ENST00000465514 TMEM132BQ14DG7 1078 aa11.77□□□□□ -0.53
USP39-212ENST00000465514 SEPT2Q15019 361 aa11.77□□□□□ -0.53
USP39-212ENST00000465514 TMED8Q6PL24 325 aaPredicted RBP11.77□□□□□ -0.53
USP39-212ENST00000465514 TTC6Q86TZ1 520 aa11.77□□□□□ -0.53
USP39-212ENST00000465514 VWCEQ96DN2 955 aa11.77□□□□□ -0.53
USP39-212ENST00000465514 NOC4LQ9BVI4 516 aaKnown RBP11.77□□□□□ -0.53
USP39-212ENST00000465514 IL1RAPL2Q9NP60 686 aa11.77□□□□□ -0.53
USP39-212ENST00000465514 SIP14410 1827 aa11.76□□□□□ -0.53
USP39-212ENST00000465514 ZFHX2Q9C0A1 2572 aaPredicted RBP11.76□□□□□ -0.53
USP39-212ENST00000465514 MYO15AQ9UKN7 3530 aa11.76□□□□□ -0.53
USP39-212ENST00000465514 ST18O60284 1047 aa11.76□□□□□ -0.53
USP39-212ENST00000465514 SHMT1P34896 483 aa11.76□□□□□ -0.53
USP39-212ENST00000465514 PLCD1P51178 756 aa11.76□□□□□ -0.53
USP39-212ENST00000465514 GNASQ5JWF2 1037 aa11.76□□□□□ -0.53
USP39-212ENST00000465514 SPRED2Q7Z698 418 aa11.76□□□□□ -0.53
USP39-212ENST00000465514 RHPN1Q8TCX5 695 aa11.76□□□□□ -0.53
USP39-212ENST00000465514 SCLYQ96I15 445 aa11.76□□□□□ -0.53
USP39-212ENST00000465514 RIOK1Q9BRS2 568 aaKnown RBP11.76□□□□□ -0.53
USP39-212ENST00000465514 UPF3AQ9H1J1 476 aaKnown RBP11.76□□□□□ -0.53
USP39-212ENST00000465514 UBE2ZQ9H832 354 aaPredicted RBP11.76□□□□□ -0.53
USP39-212ENST00000465514 DCHS1Q96JQ0 3298 aa11.76□□□□□ -0.53
USP39-212ENST00000465514 MAGEB6P1A0A0J9YX57 407 aa11.75□□□□□ -0.53
USP39-212ENST00000465514 DCXO43602 365 aa11.75□□□□□ -0.53
USP39-212ENST00000465514 LPXNO60711 386 aa11.75□□□□□ -0.53
USP39-212ENST00000465514 SNAI1O95863 264 aaPredicted RBP11.75□□□□□ -0.53
USP39-212ENST00000465514 POLR3DP05423 398 aaPredicted RBP11.75□□□□□ -0.53
USP39-212ENST00000465514 IL9P15248 144 aa11.75□□□□□ -0.53
USP39-212ENST00000465514 TTF1Q15361 905 aaPredicted RBP11.75□□□□□ -0.53
USP39-212ENST00000465514 HSP90AB4PQ58FF6 505 aa11.75□□□□□ -0.53
USP39-212ENST00000465514 HFE2Q6ZVN8 426 aa11.75□□□□□ -0.53
USP39-212ENST00000465514 RPUSD2Q8IZ73 545 aaKnown RBP11.75□□□□□ -0.53
USP39-212ENST00000465514 SPICE1Q8N0Z3 855 aa11.75□□□□□ -0.53
USP39-212ENST00000465514 SPC25Q9HBM1 224 aa11.75□□□□□ -0.53
USP39-212ENST00000465514 TET1Q8NFU7 2136 aa11.75□□□□□ -0.53
USP39-212ENST00000465514 MPHOSPH10O00566 681 aaKnown RBP11.74□□□□□ -0.53
USP39-212ENST00000465514 CTAGE5O15320 804 aa11.74□□□□□ -0.53
USP39-212ENST00000465514 PDE6AP16499 860 aa11.74□□□□□ -0.53
USP39-212ENST00000465514 GJA9P57773 515 aa11.74□□□□□ -0.53
USP39-212ENST00000465514 FOXK2Q01167 660 aa11.74□□□□□ -0.53
USP39-212ENST00000465514 SLC9C2Q5TAH2 1124 aa11.74□□□□□ -0.53
USP39-212ENST00000465514 RIOX2Q8IUF8 465 aa11.74□□□□□ -0.53
USP39-212ENST00000465514 MSL3Q8N5Y2 521 aaKnown RBP11.74□□□□□ -0.53
USP39-212ENST00000465514 SLC43A3Q8NBI5 491 aa11.74□□□□□ -0.53
USP39-212ENST00000465514 GDPD5Q8WTR4 605 aa11.74□□□□□ -0.53
USP39-212ENST00000465514 CRNKL1Q9BZJ0 848 aaKnown RBP11.74□□□□□ -0.53
USP39-212ENST00000465514 TRPV6Q9H1D0 765 aa11.74□□□□□ -0.53
USP39-212ENST00000465514 TECTAO75443 2155 aa11.74□□□□□ -0.53
USP39-212ENST00000465514 GOLIM4O00461 696 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 PITPNM1O00562 1244 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 ZNF536O15090 1300 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 B4GALT4O60513 344 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 KCNA5P22460 613 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 BEX3Q00994 111 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 EVX2Q03828 476 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 GABPAQ06546 454 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 CCDC144BQ3MJ40 725 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 LEXMQ3ZCV2 418 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 ZBED9Q6R2W3 1325 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 CXCL17Q6UXB2 119 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 DEFB128Q7Z7B8 93 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 KMT2EQ8IZD2 1858 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 CLASRPQ8N2M8 674 aaKnown RBP11.73□□□□□ -0.53
USP39-212ENST00000465514 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.73□□□□□ -0.53
USP39-212ENST00000465514 DNAJC2Q99543 621 aaKnown RBP11.73□□□□□ -0.53
USP39-212ENST00000465514 BCL11AQ9H165 835 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 ZNF532Q9HCE3 1301 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 MCM9Q9NXL9 1143 aa11.73□□□□□ -0.53
USP39-212ENST00000465514 BAZ2AQ9UIF9 1905 aaKnown RBP11.73□□□□□ -0.53
USP39-212ENST00000465514 CACNA1HO95180 2353 aa11.72□□□□□ -0.53
USP39-212ENST00000465514 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.72□□□□□ -0.53
USP39-212ENST00000465514 TCRBV5S4A2TA0A5A2 114 aa11.72□□□□□ -0.53
USP39-212ENST00000465514 PFKMP08237 780 aa11.72□□□□□ -0.53
USP39-212ENST00000465514 IFIT2P09913 472 aaKnown RBP11.72□□□□□ -0.53
USP39-212ENST00000465514 MS4A1P11836 297 aa11.72□□□□□ -0.53
USP39-212ENST00000465514 ACVR2BQ13705 512 aa11.72□□□□□ -0.53
USP39-212ENST00000465514 PTCRAQ6ISU1 281 aaPredicted RBP11.72□□□□□ -0.53
USP39-212ENST00000465514 MAMDC4Q6UXC1 1216 aa11.72□□□□□ -0.53
USP39-212ENST00000465514 CLEC10AQ8IUN9 316 aa11.72□□□□□ -0.53
USP39-212ENST00000465514 SIRT2Q8IXJ6 389 aa11.72□□□□□ -0.53
USP39-212ENST00000465514 RPAP2Q8IXW5 612 aaPredicted RBP11.72□□□□□ -0.53
USP39-212ENST00000465514 PRSS33Q8NF86 280 aa11.72□□□□□ -0.53
USP39-212ENST00000465514 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.72□□□□□ -0.53
USP39-212ENST00000465514 KIF1BPQ96EK5 621 aa11.72□□□□□ -0.53
USP39-212ENST00000465514 AGBL1Q96MI9 1066 aa11.72□□□□□ -0.53
USP39-212ENST00000465514 SLC9A7Q96T83 725 aa11.72□□□□□ -0.53
USP39-212ENST00000465514 ZNF214Q9UL59 606 aaPredicted RBP11.72□□□□□ -0.53
USP39-212ENST00000465514 GRIN2DO15399 1336 aa11.71□□□□□ -0.53
USP39-212ENST00000465514 POTEB3A0JP26 581 aa11.71□□□□□ -0.53
USP39-212ENST00000465514 HMMRO75330 724 aa11.71□□□□□ -0.53
USP39-212ENST00000465514 CYP2D6P10635 497 aa11.71□□□□□ -0.53
USP39-212ENST00000465514 STAT3P40763 770 aa11.71□□□□□ -0.53
USP39-212ENST00000465514 MKRN4PQ13434 485 aaPredicted RBP11.71□□□□□ -0.53
USP39-212ENST00000465514 ITGA7Q13683 1181 aa11.71□□□□□ -0.53
USP39-212ENST00000465514 DIEXFQ68CQ4 756 aaKnown RBP11.71□□□□□ -0.53
USP39-212ENST00000465514 POTEBQ6S5H4 581 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms