RNA–Protein interactions for RNA: ENST00000461869.5

SF3A3-203, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 3

Gene SF3A3, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-203ENST00000461869 SMCHD1A6NHR9 2005 aa18.27■□□□□ 0.52
SF3A3-203ENST00000461869 SNRNP48Q6IEG0 339 aaKnown RBP18.27■□□□□ 0.52
SF3A3-203ENST00000461869 ZNF589Q86UQ0 364 aaPredicted RBP18.27■□□□□ 0.52
SF3A3-203ENST00000461869 TOX2Q96NM4 488 aa18.27■□□□□ 0.52
SF3A3-203ENST00000461869 NUP88Q99567 741 aaPredicted RBP18.27■□□□□ 0.52
SF3A3-203ENST00000461869 DSCC1Q9BVC3 393 aa18.27■□□□□ 0.52
SF3A3-203ENST00000461869 TEX13BQ9BXU2 312 aa18.27■□□□□ 0.52
SF3A3-203ENST00000461869 PUS7LQ9H0K6 701 aaKnown RBP18.27■□□□□ 0.52
SF3A3-203ENST00000461869 ARPP21Q9UBL0 812 aaPredicted RBP18.27■□□□□ 0.52
SF3A3-203ENST00000461869 SYNGAP1Q96PV0 1343 aa18.26■□□□□ 0.51
SF3A3-203ENST00000461869 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.26■□□□□ 0.51
SF3A3-203ENST00000461869 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.26■□□□□ 0.51
SF3A3-203ENST00000461869 MOXD2PA6NHM9 499 aa18.26■□□□□ 0.51
SF3A3-203ENST00000461869 SNAI1O95863 264 aaPredicted RBP18.26■□□□□ 0.51
SF3A3-203ENST00000461869 HSPA4P34932 840 aa18.26■□□□□ 0.51
SF3A3-203ENST00000461869 SLC4A3P48751 1232 aa18.26■□□□□ 0.51
SF3A3-203ENST00000461869 KCNA10Q16322 511 aa18.26■□□□□ 0.51
SF3A3-203ENST00000461869 RNF20Q5VTR2 975 aa18.26■□□□□ 0.51
SF3A3-203ENST00000461869 KLHDC9Q8NEP7 349 aa18.26■□□□□ 0.51
SF3A3-203ENST00000461869 MAP4K1Q92918 833 aa18.26■□□□□ 0.51
SF3A3-203ENST00000461869 OSBP2Q969R2 916 aa18.26■□□□□ 0.51
SF3A3-203ENST00000461869 ZHX1Q9UKY1 873 aaPredicted RBP18.26■□□□□ 0.51
SF3A3-203ENST00000461869 RIPK3Q9Y572 518 aa18.26■□□□□ 0.51
SF3A3-203ENST00000461869 U3KPZ7 1027 aaPredicted RBP18.26■□□□□ 0.51
SF3A3-203ENST00000461869 F5H6K3 240 aa18.25■□□□□ 0.51
SF3A3-203ENST00000461869 DNAJB2P25686 324 aa18.25■□□□□ 0.51
SF3A3-203ENST00000461869 KLRC3Q07444 240 aa18.25■□□□□ 0.51
SF3A3-203ENST00000461869 GRIN2CQ14957 1233 aa18.25■□□□□ 0.51
SF3A3-203ENST00000461869 RABEP1Q15276 862 aa18.25■□□□□ 0.51
SF3A3-203ENST00000461869 MAMDC4Q6UXC1 1216 aa18.25■□□□□ 0.51
SF3A3-203ENST00000461869 STK11IPQ8N1F8 1099 aa18.25■□□□□ 0.51
SF3A3-203ENST00000461869 SEC62Q99442 399 aaKnown RBP18.25■□□□□ 0.51
SF3A3-203ENST00000461869 MKNK2Q9HBH9 465 aa18.25■□□□□ 0.51
SF3A3-203ENST00000461869 PLXNA1Q9UIW2 1896 aa18.24■□□□□ 0.51
SF3A3-203ENST00000461869 LAMA2P24043 3122 aaKnown RBP18.24■□□□□ 0.51
SF3A3-203ENST00000461869 DNAJC25-GNG10A0A024R161 153 aa18.24■□□□□ 0.51
SF3A3-203ENST00000461869 M0R2C6 588 aa18.24■□□□□ 0.51
SF3A3-203ENST00000461869 GPAA1O43292 621 aa18.24■□□□□ 0.51
SF3A3-203ENST00000461869 DUSP11O75319 330 aaKnown RBP18.24■□□□□ 0.51
SF3A3-203ENST00000461869 NDUFB10O96000 172 aa18.24■□□□□ 0.51
SF3A3-203ENST00000461869 TIMP1P01033 207 aa18.24■□□□□ 0.51
SF3A3-203ENST00000461869 GNAT2P19087 354 aa18.24■□□□□ 0.51
SF3A3-203ENST00000461869 CCSAPQ6IQ19 270 aaPredicted RBP18.24■□□□□ 0.51
SF3A3-203ENST00000461869 CPXCR1Q8N123 301 aa18.24■□□□□ 0.51
SF3A3-203ENST00000461869 PRPF38AQ8NAV1 312 aaKnown RBP18.24■□□□□ 0.51
SF3A3-203ENST00000461869 IL17RAQ96F46 866 aa18.24■□□□□ 0.51
SF3A3-203ENST00000461869 GLT1D1Q96MS3 346 aa18.24■□□□□ 0.51
SF3A3-203ENST00000461869 NYAP2Q9P242 653 aa18.24■□□□□ 0.51
SF3A3-203ENST00000461869 CTDP1Q9Y5B0 961 aaPredicted RBP18.24■□□□□ 0.51
SF3A3-203ENST00000461869 RBM8AQ9Y5S9 174 aaKnown RBP18.24■□□□□ 0.51
SF3A3-203ENST00000461869 MYADML2A6NDP7 307 aa18.23■□□□□ 0.51
SF3A3-203ENST00000461869 ZBED4O75132 1171 aa18.23■□□□□ 0.51
SF3A3-203ENST00000461869 C6orf222P0C671 652 aaPredicted RBP18.23■□□□□ 0.51
SF3A3-203ENST00000461869 RASA1P20936 1047 aa18.23■□□□□ 0.51
SF3A3-203ENST00000461869 PTH1RQ03431 593 aa18.23■□□□□ 0.51
SF3A3-203ENST00000461869 BECN1Q14457 450 aa18.23■□□□□ 0.51
SF3A3-203ENST00000461869 SBK1Q52WX2 424 aa18.23■□□□□ 0.51
SF3A3-203ENST00000461869 CCDC129Q6ZRS4 1044 aa18.23■□□□□ 0.51
SF3A3-203ENST00000461869 ZNF467Q7Z7K2 595 aaPredicted RBP18.23■□□□□ 0.51
SF3A3-203ENST00000461869 SYMPKQ92797 1274 aaKnown RBP18.23■□□□□ 0.51
SF3A3-203ENST00000461869 STRBPQ96SI9 672 aaKnown RBP18.23■□□□□ 0.51
SF3A3-203ENST00000461869 CLIP2Q9UDT6 1046 aa18.23■□□□□ 0.51
SF3A3-203ENST00000461869 CUL9Q8IWT3 2517 aa18.23■□□□□ 0.51
SF3A3-203ENST00000461869 ELP1O95163 1332 aa18.23■□□□□ 0.51
SF3A3-203ENST00000461869 MROH7Q68CQ1 1323 aa18.23■□□□□ 0.51
SF3A3-203ENST00000461869 MINDY4BA8MYZ0 360 aa18.22■□□□□ 0.51
SF3A3-203ENST00000461869 ATP2A1O14983 1001 aa18.22■□□□□ 0.51
SF3A3-203ENST00000461869 CST5P28325 142 aaPredicted RBP18.22■□□□□ 0.51
SF3A3-203ENST00000461869 IRX5P78411 483 aaPredicted RBP18.22■□□□□ 0.51
SF3A3-203ENST00000461869 ACVR2BQ13705 512 aa18.22■□□□□ 0.51
SF3A3-203ENST00000461869 MFSD5Q6N075 450 aa18.22■□□□□ 0.51
SF3A3-203ENST00000461869 PCSK9Q8NBP7 692 aaKnown RBP18.22■□□□□ 0.51
SF3A3-203ENST00000461869 KIFC2Q96AC6 838 aa18.22■□□□□ 0.51
SF3A3-203ENST00000461869 VTI1AQ96AJ9 217 aa18.22■□□□□ 0.51
SF3A3-203ENST00000461869 TIFAQ96CG3 184 aa18.22■□□□□ 0.51
SF3A3-203ENST00000461869 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.22■□□□□ 0.519e-7■■■■□ 24.6
SF3A3-203ENST00000461869 ZNF576Q9H609 170 aa18.22■□□□□ 0.51
SF3A3-203ENST00000461869 SPC25Q9HBM1 224 aa18.22■□□□□ 0.51
SF3A3-203ENST00000461869 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.22■□□□□ 0.51
SF3A3-203ENST00000461869 CTNNA3Q9UI47 895 aa18.22■□□□□ 0.51
SF3A3-203ENST00000461869 TBX21Q9UL17 535 aa18.22■□□□□ 0.51
SF3A3-203ENST00000461869 GSG1L2A8MUP6 293 aa18.21■□□□□ 0.51
SF3A3-203ENST00000461869 ASGR1P07306 291 aa18.21■□□□□ 0.51
SF3A3-203ENST00000461869 HSPD1P10809 573 aaKnown RBP18.21■□□□□ 0.51
SF3A3-203ENST00000461869 CDK7P50613 346 aa18.21■□□□□ 0.51
SF3A3-203ENST00000461869 PPIGQ13427 754 aaKnown RBP eCLIP18.21■□□□□ 0.513e-7■□□□□ 11.1
SF3A3-203ENST00000461869 NECTIN1Q15223 517 aa18.21■□□□□ 0.51
SF3A3-203ENST00000461869 CCDC174Q6PII3 467 aa18.21■□□□□ 0.51
SF3A3-203ENST00000461869 ANKRD35Q8N283 1001 aa18.21■□□□□ 0.51
SF3A3-203ENST00000461869 KCNB2Q92953 911 aa18.21■□□□□ 0.51
SF3A3-203ENST00000461869 RAVER2Q9HCJ3 691 aaKnown RBP18.21■□□□□ 0.51
SF3A3-203ENST00000461869 PRDM6Q9NQX0 595 aa18.21■□□□□ 0.51
SF3A3-203ENST00000461869 EYSQ5T1H1 3165 aa18.21■□□□□ 0.51
SF3A3-203ENST00000461869 ZMYM6O95789 1325 aa18.21■□□□□ 0.51
SF3A3-203ENST00000461869 KRT32Q14532 448 aa18.2■□□□□ 0.5
SF3A3-203ENST00000461869 CCDC144BQ3MJ40 725 aa18.2■□□□□ 0.5
SF3A3-203ENST00000461869 GNASQ5JWF2 1037 aa18.2■□□□□ 0.5
SF3A3-203ENST00000461869 GIMAP6Q6P9H5 292 aa18.2■□□□□ 0.5
SF3A3-203ENST00000461869 ZNF444Q8N0Y2 327 aaPredicted RBP18.2■□□□□ 0.5
SF3A3-203ENST00000461869 IPO9Q96P70 1041 aaKnown RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms