RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 PRR29P0C7W0 189 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 MDM2Q00987 491 aaPredicted RBP13.31□□□□□ -0.28
SYNE2-207ENST00000458046 WTAPQ15007 396 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 SUSD4Q5VX71 490 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 VSTM4Q8IW00 320 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 PAF1Q8N7H5 531 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 PCDHB6Q9Y5E3 794 aa13.31□□□□□ -0.28
SYNE2-207ENST00000458046 MORC2Q9Y6X9 1032 aaPredicted RBP13.31□□□□□ -0.28
SYNE2-207ENST00000458046 SMIM22K7EJ46 135 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 TOMM70O94826 608 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 FSTL1Q12841 308 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 CCDC70Q6NSX1 233 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 USP49Q70CQ1 688 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 TRMT44Q8IYL2 757 aaKnown RBP13.3□□□□□ -0.28
SYNE2-207ENST00000458046 TRIM22Q8IYM9 498 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 KRT23Q9C075 422 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 CNNM2Q9H8M5 875 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 L2HGDHQ9H9P8 463 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 INTS13Q9NVM9 706 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 MAN1B1Q9UKM7 699 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 MYO5AQ9Y4I1 1855 aaKnown RBP13.3□□□□□ -0.28
SYNE2-207ENST00000458046 MINDY4BA8MYZ0 360 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 ETF1P62495 437 aaKnown RBP13.3□□□□□ -0.28
SYNE2-207ENST00000458046 LRRC41Q15345 812 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 ZC3H12AQ5D1E8 599 aaKnown RBP13.3□□□□□ -0.28
SYNE2-207ENST00000458046 WASF1Q92558 559 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 LRP2BPQ9P2M1 347 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 ABCF2Q9UG63 623 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 HDAC9Q9UKV0 1011 aa13.3□□□□□ -0.28
SYNE2-207ENST00000458046 ERICH2A1L162 156 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 BPNT1O95861 308 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 FMR1Q06787 632 aaKnown RBP eCLIP13.29□□□□□ -0.28
SYNE2-207ENST00000458046 CAMK2BQ13554 666 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 POSTNQ15063 836 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 ZNF34Q8IZ26 560 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 CRACR2BQ8N4Y2 399 aaPredicted RBP13.29□□□□□ -0.28
SYNE2-207ENST00000458046 KIAA1958Q8N8K9 716 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 APBA2Q99767 749 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 NACAP1Q9BZK3 213 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 TMX1Q9H3N1 280 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 CABP5Q9NP86 173 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 ENAMQ9NRM1 1142 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 FBXO2Q9UK22 296 aaPredicted RBP13.29□□□□□ -0.28
SYNE2-207ENST00000458046 hCG_1642624A0A1W2PR95 340 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 KCNJ6P48051 423 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 SART3Q15020 963 aaKnown RBP13.29□□□□□ -0.28
SYNE2-207ENST00000458046 CHPFQ8IZ52 775 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 RAI14Q9P0K7 980 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 TOGARAM1Q9Y4F4 1720 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.29□□□□□ -0.28
SYNE2-207ENST00000458046 STK36Q9NRP7 1315 aa13.29□□□□□ -0.28
SYNE2-207ENST00000458046 KIF3CO14782 793 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 PPP1R12AO14974 1030 aaPredicted RBP13.28□□□□□ -0.28
SYNE2-207ENST00000458046 URI1O94763 535 aaPredicted RBP13.28□□□□□ -0.28
SYNE2-207ENST00000458046 PTPREP23469 700 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 TRIM65Q6PJ69 517 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 REXO1L1PQ8IX06 675 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 SLC43A3Q8NBI5 491 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 SDR42E1Q8WUS8 393 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 CENPOQ9BU64 300 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 MTFR1LQ9H019 292 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 ZNF446Q9NWS9 450 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 NFE2L3Q9Y4A8 694 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 MYH7P12883 1935 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 FANCGO15287 622 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 HSPA1AP0DMV8 641 aaKnown RBP13.28□□□□□ -0.28
SYNE2-207ENST00000458046 HSPA1BP0DMV9 641 aaKnown RBP13.28□□□□□ -0.28
SYNE2-207ENST00000458046 ADKP55263 362 aaKnown RBP13.28□□□□□ -0.28
SYNE2-207ENST00000458046 E2F5Q15329 346 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 PDXDC1Q6P996 788 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 FANCBQ8NB91 859 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 VPS37AQ8NEZ2 397 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 SMARCE1Q969G3 411 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 ERP27Q96DN0 273 aa13.28□□□□□ -0.28
SYNE2-207ENST00000458046 HOOK1Q9UJC3 728 aaKnown RBP13.28□□□□□ -0.28
SYNE2-207ENST00000458046 FAM205CA6NFA0 338 aa13.27□□□□□ -0.28
SYNE2-207ENST00000458046 ERVV-1B6SEH8 477 aa13.27□□□□□ -0.28
SYNE2-207ENST00000458046 MTA2O94776 668 aa13.27□□□□□ -0.28
SYNE2-207ENST00000458046 IL6STP40189 918 aaPredicted RBP13.27□□□□□ -0.28
SYNE2-207ENST00000458046 RILPL1Q5EBL4 403 aa13.27□□□□□ -0.28
SYNE2-207ENST00000458046 CSRNP2Q9H175 543 aa13.27□□□□□ -0.28
SYNE2-207ENST00000458046 ABCA3Q99758 1704 aa13.27□□□□□ -0.28
SYNE2-207ENST00000458046 WTIPA6NIX2 430 aaPredicted RBP13.27□□□□□ -0.29
SYNE2-207ENST00000458046 TBX3O15119 743 aa13.27□□□□□ -0.29
SYNE2-207ENST00000458046 DEXIO95424 95 aa13.27□□□□□ -0.29
SYNE2-207ENST00000458046 GPSM2P81274 684 aa13.27□□□□□ -0.29
SYNE2-207ENST00000458046 ARHGAP29Q52LW3 1261 aa13.27□□□□□ -0.29
SYNE2-207ENST00000458046 ZNF771Q7L3S4 317 aaPredicted RBP13.27□□□□□ -0.29
SYNE2-207ENST00000458046 ZNF654Q8IZM8 581 aa13.27□□□□□ -0.29
SYNE2-207ENST00000458046 CCDC47Q96A33 483 aaKnown RBP13.27□□□□□ -0.29
SYNE2-207ENST00000458046 UBAC1Q9BSL1 405 aa13.27□□□□□ -0.29
SYNE2-207ENST00000458046 FOXP1Q9H334 677 aaPredicted RBP13.27□□□□□ -0.29
SYNE2-207ENST00000458046 SAMSN1Q9NSI8 373 aaKnown RBP13.27□□□□□ -0.29
SYNE2-207ENST00000458046 DDX60Q8IY21 1712 aaKnown RBP13.27□□□□□ -0.29
SYNE2-207ENST00000458046 CYP7A1P22680 504 aa13.26□□□□□ -0.29
SYNE2-207ENST00000458046 KRT77Q7Z794 578 aa13.26□□□□□ -0.29
SYNE2-207ENST00000458046 ADGRA1Q86SQ6 560 aa13.26□□□□□ -0.29
SYNE2-207ENST00000458046 KRT222Q8N1A0 295 aa13.26□□□□□ -0.29
SYNE2-207ENST00000458046 MED15Q96RN5 788 aa13.26□□□□□ -0.29
SYNE2-207ENST00000458046 CCP110O43303 1012 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms