RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 TMEM238LA0A1B0GVL6 79 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 IFRD1O00458 451 aaPredicted RBP5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 XYLBO75191 536 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 TRPA1O75762 1119 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 FOSP01100 380 aaPredicted RBP5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 CES1P23141 567 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 NSUN2Q08J23 767 aaKnown RBP eCLIP5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 PRPF4BQ13523 1007 aaKnown RBP5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 PWP1Q13610 501 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 PKN1Q16512 942 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 COBLL1Q53SF7 1204 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 SNAP47Q5SQN1 464 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 WWC2Q6AWC2 1192 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 MCTP2Q6DN12 878 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 SPATC1Q76KD6 591 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 BTLAQ7Z6A9 289 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 CCDC89Q8N998 374 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 JARID2Q92833 1246 aaPredicted RBP5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 FAM81BQ96LP2 452 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 NACA2Q9H009 215 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 RBSNQ9H1K0 784 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 RPAP3Q9H6T3 665 aaPredicted RBP5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 TRPV5Q9NQA5 729 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 TMEM260Q9NX78 707 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 STRIP2Q9ULQ0 834 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 FNDC3AQ9Y2H6 1198 aaKnown RBP5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 CD2APQ9Y5K6 639 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 PIK3C2GO75747 1445 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 PRAG1Q86YV5 1406 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 METP08581 1390 aa5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 SOS2Q07890 1332 aaPredicted RBP5.53□□□□□ -1.52
CCDC88A-209ENST00000456975 A0A1W2PP55 124 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 PDPK1O15530 556 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 DIAPH1O60610 1272 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 RPN1P04843 607 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 HSP90AB1P08238 724 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 MSL3P1P0C860 447 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 MCM4P33991 863 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 PTGIRP43119 386 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 ARSDP51689 593 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 IFRD2Q12894 506 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 R3HDM1Q15032 1099 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 TAF11Q15544 211 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 SYCP2LQ5T4T6 812 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 LRRC69Q6ZNQ3 347 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 BICDL1Q6ZP65 573 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 PRPF38AQ8NAV1 312 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 NELL1Q92832 810 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 NKD1Q969G9 470 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 NACC2Q96BF6 587 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 TMEM87BQ96K49 555 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 RMDN2Q96LZ7 410 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 DEF6Q9H4E7 631 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 ABI2Q9NYB9 513 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 ZMAT5Q9UDW3 170 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 POLG2Q9UHN1 485 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 NRAPQ86VF7 1730 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 SLIT2O94813 1529 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 A0A0G2JS52 829 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 MYO1BO43795 1136 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 RGS20O76081 388 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 VIL1P09327 827 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 ACPPP15309 386 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 ZNF24P17028 368 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 HOXC13P31276 330 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 LIG3P49916 1009 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 EIF2B5Q13144 721 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 BNC2Q6ZN30 1099 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 C16orf86Q6ZW13 317 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 CHPFQ8IZ52 775 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 APPL2Q8NEU8 664 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 BICD1Q96G01 975 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 FAM163AQ96GL9 167 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 MRGPRX2Q96LB1 330 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 SIN3AQ96ST3 1273 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 ZFAND3Q9H8U3 227 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 C14orf93Q9H972 538 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 ABCB6Q9NP58 842 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 CWC15Q9P013 229 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 TBC1D7Q9P0N9 293 aa5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-209ENST00000456975 KIF1AQ12756 1690 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 PXDNQ92626 1479 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 A0A1W2PRQ8 180 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 B2RBV5 119 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 PAGE1O75459 146 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 ASMTLO95671 621 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 TFE3P19532 575 aaPredicted RBP5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 SH3BGRP55822 239 aaPredicted RBP5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 GABPB1Q06547 395 aaPredicted RBP5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 GRIN2CQ14957 1233 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 MTERF2Q49AM1 385 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 PARP10Q53GL7 1025 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 DALRD3Q5D0E6 543 aaKnown RBP5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 SLC27A3Q5K4L6 730 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 FAAH2Q6GMR7 532 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 DTHD1Q6ZMT9 781 aa5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 RBM12BQ8IXT5 1001 aaKnown RBP5.51□□□□□ -1.53
CCDC88A-209ENST00000456975 ARL6IP6Q8N6S5 226 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms