RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 IKQ13123 557 aaPredicted RBP20.34■□□□□ 0.85
USP39-208ENST00000455732 KCTD2Q14681 263 aa20.34■□□□□ 0.85
USP39-208ENST00000455732 STOX1Q6ZVD7 989 aa20.34■□□□□ 0.85
USP39-208ENST00000455732 CYB5R4Q7L1T6 521 aa20.34■□□□□ 0.85
USP39-208ENST00000455732 CPXCR1Q8N123 301 aa20.34■□□□□ 0.85
USP39-208ENST00000455732 PNMA1Q8ND90 353 aa20.34■□□□□ 0.85
USP39-208ENST00000455732 NCOA7Q8NI08 942 aa20.34■□□□□ 0.85
USP39-208ENST00000455732 RAVER2Q9HCJ3 691 aaKnown RBP20.34■□□□□ 0.85
USP39-208ENST00000455732 ANO2Q9NQ90 1003 aa20.34■□□□□ 0.85
USP39-208ENST00000455732 PRR12Q9ULL5 1215 aa20.34■□□□□ 0.85
USP39-208ENST00000455732 MTMR7Q9Y216 660 aa20.34■□□□□ 0.85
USP39-208ENST00000455732 ZNF536O15090 1300 aa20.33■□□□□ 0.85
USP39-208ENST00000455732 PGK2P07205 417 aa20.33■□□□□ 0.85
USP39-208ENST00000455732 SEC23AQ15436 765 aa20.33■□□□□ 0.85
USP39-208ENST00000455732 ZNF792Q3KQV3 632 aa20.33■□□□□ 0.85
USP39-208ENST00000455732 NECAB2Q7Z6G3 386 aa20.33■□□□□ 0.85
USP39-208ENST00000455732 RALYLQ86SE5 291 aaKnown RBP20.33■□□□□ 0.85
USP39-208ENST00000455732 DPF3Q92784 378 aa20.33■□□□□ 0.85
USP39-208ENST00000455732 CHMP4CQ96CF2 233 aa20.33■□□□□ 0.85
USP39-208ENST00000455732 KAT14Q9H8E8 782 aa20.33■□□□□ 0.85
USP39-208ENST00000455732 DIS3Q9Y2L1 958 aaKnown RBP20.33■□□□□ 0.85
USP39-208ENST00000455732 H0YGN5 161 aa20.32■□□□□ 0.84
USP39-208ENST00000455732 NECTIN1Q15223 517 aa20.32■□□□□ 0.84
USP39-208ENST00000455732 GPATCH4Q5T3I0 446 aaKnown RBP20.32■□□□□ 0.84
USP39-208ENST00000455732 SYDE2Q5VT97 1194 aa20.32■□□□□ 0.84
USP39-208ENST00000455732 CHST13Q8NET6 341 aa20.32■□□□□ 0.84
USP39-208ENST00000455732 RANBP17Q9H2T7 1088 aaKnown RBP20.32■□□□□ 0.84
USP39-208ENST00000455732 FBXO40Q9UH90 709 aa20.32■□□□□ 0.84
USP39-208ENST00000455732 DDX20Q9UHI6 824 aaKnown RBP20.32■□□□□ 0.84
USP39-208ENST00000455732 DNAH12Q6ZR08 3092 aa20.32■□□□□ 0.84
USP39-208ENST00000455732 FRMPD2Q68DX3 1309 aaPredicted RBP20.31■□□□□ 0.84
USP39-208ENST00000455732 DNAJC25-GNG10A0A024R161 153 aa20.31■□□□□ 0.84
USP39-208ENST00000455732 SLC27A2O14975 620 aa20.31■□□□□ 0.84
USP39-208ENST00000455732 MSCO60682 206 aa20.31■□□□□ 0.84
USP39-208ENST00000455732 TKFCQ3LXA3 575 aa20.31■□□□□ 0.84
USP39-208ENST00000455732 IFIT1BQ5T764 474 aaKnown RBP20.31■□□□□ 0.84
USP39-208ENST00000455732 TTBK2Q6IQ55 1244 aa20.31■□□□□ 0.84
USP39-208ENST00000455732 MB21D2Q8IYB1 491 aaPredicted RBP20.31■□□□□ 0.84
USP39-208ENST00000455732 CNGA1P29973 690 aa20.3■□□□□ 0.84
USP39-208ENST00000455732 CREB3L3Q68CJ9 461 aa20.3■□□□□ 0.84
USP39-208ENST00000455732 MTA3Q9BTC8 594 aa20.3■□□□□ 0.84
USP39-208ENST00000455732 COLQQ9Y215 455 aaPredicted RBP20.3■□□□□ 0.84
USP39-208ENST00000455732 ICAM1P05362 532 aa20.29■□□□□ 0.84
USP39-208ENST00000455732 COL6A1P12109 1028 aa20.29■□□□□ 0.84
USP39-208ENST00000455732 SLC16A2P36021 539 aa20.29■□□□□ 0.84
USP39-208ENST00000455732 SLC4A3P48751 1232 aa20.29■□□□□ 0.84
USP39-208ENST00000455732 SART3Q15020 963 aaKnown RBP20.29■□□□□ 0.84
USP39-208ENST00000455732 ASPRV1Q53RT3 343 aa20.29■□□□□ 0.84
USP39-208ENST00000455732 PRAMEF19Q5SWL8 479 aa20.29■□□□□ 0.84
USP39-208ENST00000455732 TINF2Q9BSI4 451 aa20.29■□□□□ 0.84
USP39-208ENST00000455732 C11orf49Q9H6J7 331 aa20.29■□□□□ 0.84
USP39-208ENST00000455732 GPCPD1Q9NPB8 672 aa20.29■□□□□ 0.84
USP39-208ENST00000455732 PNMA2Q9UL42 364 aa20.29■□□□□ 0.84
USP39-208ENST00000455732 LCTP09848 1927 aa20.29■□□□□ 0.84
USP39-208ENST00000455732 PFASO15067 1338 aa20.28■□□□□ 0.84
USP39-208ENST00000455732 SEPT4O43236 478 aa20.28■□□□□ 0.84
USP39-208ENST00000455732 FXR1P51114 621 aaKnown RBP eCLIP20.28■□□□□ 0.84
USP39-208ENST00000455732 ANTXR2P58335 489 aa20.28■□□□□ 0.84
USP39-208ENST00000455732 RNF20Q5VTR2 975 aa20.28■□□□□ 0.84
USP39-208ENST00000455732 AGBL1Q96MI9 1066 aa20.28■□□□□ 0.84
USP39-208ENST00000455732 ACAD9Q9H845 621 aa20.28■□□□□ 0.84
USP39-208ENST00000455732 NRBP1Q9UHY1 535 aa20.28■□□□□ 0.84
USP39-208ENST00000455732 MYH6P13533 1939 aa20.27■□□□□ 0.84
USP39-208ENST00000455732 TRIOBPQ9H2D6 2365 aa20.27■□□□□ 0.84
USP39-208ENST00000455732 ERICH2A1L162 156 aa20.27■□□□□ 0.84
USP39-208ENST00000455732 IFIT3O14879 490 aaKnown RBP20.27■□□□□ 0.84
USP39-208ENST00000455732 CCDC174Q6PII3 467 aa20.27■□□□□ 0.84
USP39-208ENST00000455732 DDX11Q96FC9 970 aa20.27■□□□□ 0.84
USP39-208ENST00000455732 RNF146Q9NTX7 359 aa20.27■□□□□ 0.84
USP39-208ENST00000455732 RANBP2P49792 3224 aaKnown RBP20.27■□□□□ 0.83
USP39-208ENST00000455732 WDR19Q8NEZ3 1342 aa20.27■□□□□ 0.83
USP39-208ENST00000455732 PARP1P09874 1014 aaKnown RBP20.26■□□□□ 0.83
USP39-208ENST00000455732 GOLGA8HP0CJ92 632 aa20.26■□□□□ 0.83
USP39-208ENST00000455732 SNAP25P60880 206 aa20.26■□□□□ 0.83
USP39-208ENST00000455732 MAMDC4Q6UXC1 1216 aa20.26■□□□□ 0.83
USP39-208ENST00000455732 MSL3Q8N5Y2 521 aaKnown RBP20.26■□□□□ 0.83
USP39-208ENST00000455732 IGDCC4Q8TDY8 1250 aa20.26■□□□□ 0.83
USP39-208ENST00000455732 FGD4Q96M96 766 aa20.26■□□□□ 0.83
USP39-208ENST00000455732 HOMER2Q9NSB8 354 aa20.26■□□□□ 0.83
USP39-208ENST00000455732 CCPG1Q9ULG6 757 aa20.26■□□□□ 0.83
USP39-208ENST00000455732 NR2E3Q9Y5X4 410 aa20.26■□□□□ 0.83
USP39-208ENST00000455732 EVI5O60447 810 aa20.25■□□□□ 0.83
USP39-208ENST00000455732 TAL1P17542 331 aaPredicted RBP20.25■□□□□ 0.83
USP39-208ENST00000455732 WTAPQ15007 396 aa20.25■□□□□ 0.83
USP39-208ENST00000455732 TSGA10IPQ3SY00 556 aa20.25■□□□□ 0.83
USP39-208ENST00000455732 CHRDL2Q6WN34 429 aa20.25■□□□□ 0.83
USP39-208ENST00000455732 ZNF467Q7Z7K2 595 aaPredicted RBP20.25■□□□□ 0.83
USP39-208ENST00000455732 ANKRD35Q8N283 1001 aa20.25■□□□□ 0.83
USP39-208ENST00000455732 TRERF1Q96PN7 1200 aa20.25■□□□□ 0.83
USP39-208ENST00000455732 SYNGAP1Q96PV0 1343 aa20.25■□□□□ 0.83
USP39-208ENST00000455732 SNAI1O95863 264 aaPredicted RBP20.24■□□□□ 0.83
USP39-208ENST00000455732 ZNF865P0CJ78 1059 aaPredicted RBP20.24■□□□□ 0.83
USP39-208ENST00000455732 ALAS1P13196 640 aa20.24■□□□□ 0.83
USP39-208ENST00000455732 MCM5P33992 734 aa20.24■□□□□ 0.83
USP39-208ENST00000455732 TMEM67Q5HYA8 995 aa20.24■□□□□ 0.83
USP39-208ENST00000455732 ANO1Q5XXA6 986 aa20.24■□□□□ 0.83
USP39-208ENST00000455732 CHST3Q7LGC8 479 aa20.24■□□□□ 0.83
USP39-208ENST00000455732 TMEM87BQ96K49 555 aa20.24■□□□□ 0.83
USP39-208ENST00000455732 A1CFQ9NQ94 594 aaKnown RBP20.24■□□□□ 0.83
USP39-208ENST00000455732 DNM1LO00429 736 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms