RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 WTAPQ15007 396 aa10.2□□□□□ -0.78
COL28A1-205ENST00000453441 SEC23AQ15436 765 aa10.2□□□□□ -0.78
COL28A1-205ENST00000453441 TAF1CQ15572 869 aaPredicted RBP10.2□□□□□ -0.78
COL28A1-205ENST00000453441 IFIT1BQ5T764 474 aaKnown RBP10.2□□□□□ -0.78
COL28A1-205ENST00000453441 BLOC1S2Q6QNY1 142 aa10.2□□□□□ -0.78
COL28A1-205ENST00000453441 LBX2Q6XYB7 198 aa10.2□□□□□ -0.78
COL28A1-205ENST00000453441 FAM43AQ8N2R8 423 aa10.2□□□□□ -0.78
COL28A1-205ENST00000453441 ENAHQ8N8S7 591 aaPredicted RBP10.2□□□□□ -0.78
COL28A1-205ENST00000453441 TMEM47Q9BQJ4 181 aa10.2□□□□□ -0.78
COL28A1-205ENST00000453441 HOXC10Q9NYD6 342 aa10.2□□□□□ -0.78
COL28A1-205ENST00000453441 SNX14Q9Y5W7 946 aa10.2□□□□□ -0.78
COL28A1-205ENST00000453441 NMT2O60551 498 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 TLR2O60603 784 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 NDUFB10O96000 172 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 CALM1P0DP23 149 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 CALM2P0DP24 149 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 CALM3P0DP25 149 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 BMP3P12645 472 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 SLC1A4P43007 532 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 RCAN1P53805 252 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 COG2Q14746 738 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 ZYXQ15942 572 aaKnown RBP10.19□□□□□ -0.78
COL28A1-205ENST00000453441 TMEM67Q5HYA8 995 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 TREML2Q5T2D2 321 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 GPATCH4Q5T3I0 446 aaKnown RBP10.19□□□□□ -0.78
COL28A1-205ENST00000453441 SLFN13Q68D06 897 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 CATSPERGQ6ZRH7 1159 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 CYB5R4Q7L1T6 521 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 FAM160B2Q86V87 743 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 CLEC10AQ8IUN9 316 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 LRRC47Q8N1G4 583 aaKnown RBP10.19□□□□□ -0.78
COL28A1-205ENST00000453441 FBXL16Q8N461 479 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 MB21D1Q8N884 522 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 PNMA1Q8ND90 353 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 SMCR8Q8TEV9 937 aaPredicted RBP10.19□□□□□ -0.78
COL28A1-205ENST00000453441 CHURC1Q8WUH1 139 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 JAKMIP1Q96N16 626 aaKnown RBP10.19□□□□□ -0.78
COL28A1-205ENST00000453441 MAP3K14Q99558 947 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 RPAP3Q9H6T3 665 aaPredicted RBP10.19□□□□□ -0.78
COL28A1-205ENST00000453441 FEM1BQ9UK73 627 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 PNMA2Q9UL42 364 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 TAF6LQ9Y6J9 622 aa10.19□□□□□ -0.78
COL28A1-205ENST00000453441 SH2B2O14492 632 aaPredicted RBP10.18□□□□□ -0.78
COL28A1-205ENST00000453441 TRPA1O75762 1119 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 DDAH1O94760 285 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 SNHG28P0DPA3 235 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 CTCFP49711 727 aaPredicted RBP10.18□□□□□ -0.78
COL28A1-205ENST00000453441 EXOSC10Q01780 885 aaKnown RBP10.18□□□□□ -0.78
COL28A1-205ENST00000453441 KCNC4Q03721 635 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 CRHR2Q13324 411 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 ARHGEF6Q15052 776 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 FAM110CQ1W6H9 321 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 ASPRV1Q53RT3 343 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 CATIPQ7Z7H3 387 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 SGMS1Q86VZ5 419 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 IGDCC4Q8TDY8 1250 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 PHOX2BQ99453 314 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 ZKSCAN3Q9BRR0 538 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 TANGO6Q9C0B7 1094 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 ASCC2Q9H1I8 757 aaPredicted RBP10.18□□□□□ -0.78
COL28A1-205ENST00000453441 CYP46A1Q9Y6A2 500 aa10.18□□□□□ -0.78
COL28A1-205ENST00000453441 ADGRA2Q96PE1 1338 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 CCDC69A6NI79 296 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 RAD21O60216 631 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 FLOT1O75955 427 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 HSPA1AP0DMV8 641 aaKnown RBP10.17□□□□□ -0.78
COL28A1-205ENST00000453441 HSPA1BP0DMV9 641 aaKnown RBP10.17□□□□□ -0.78
COL28A1-205ENST00000453441 PDHBP11177 359 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 CASTP20810 708 aaKnown RBP10.17□□□□□ -0.78
COL28A1-205ENST00000453441 RPS6KB1P23443 525 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 COPB2P35606 906 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 RBM25P49756 843 aaKnown RBP10.17□□□□□ -0.78
COL28A1-205ENST00000453441 STAT2P52630 851 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 ANTXR2P58335 489 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 HERVK_113P62684 666 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 FGD1P98174 961 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 PPP2R5BQ15173 497 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 KMT5BQ4FZB7 885 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 FAM83BQ5T0W9 1011 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 SYNE3Q6ZMZ3 975 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 RUFY3Q7L099 469 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 SPICE1Q8N0Z3 855 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 KRI1Q8N9T8 703 aaKnown RBP10.17□□□□□ -0.78
COL28A1-205ENST00000453441 PRPF38AQ8NAV1 312 aaKnown RBP10.17□□□□□ -0.78
COL28A1-205ENST00000453441 SLF1Q9BQI6 1058 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 LY9Q9HBG7 655 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 MORF4L1Q9UBU8 362 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 PPP1R9AQ9ULJ8 1098 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 RABGAP1Q9Y3P9 1069 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 PARP14Q460N5 1801 aa10.17□□□□□ -0.78
COL28A1-205ENST00000453441 GNRH1P01148 92 aa10.16□□□□□ -0.78
COL28A1-205ENST00000453441 PARP1P09874 1014 aaKnown RBP10.16□□□□□ -0.78
COL28A1-205ENST00000453441 BCRP11274 1271 aa10.16□□□□□ -0.78
COL28A1-205ENST00000453441 KIF5BP33176 963 aa10.16□□□□□ -0.78
COL28A1-205ENST00000453441 GNAQP50148 359 aa10.16□□□□□ -0.78
COL28A1-205ENST00000453441 OAZ1P54368 228 aa10.16□□□□□ -0.78
COL28A1-205ENST00000453441 CCNA1P78396 465 aa10.16□□□□□ -0.78
COL28A1-205ENST00000453441 ZNF543Q08ER8 600 aa10.16□□□□□ -0.78
COL28A1-205ENST00000453441 KIF22Q14807 665 aa10.16□□□□□ -0.78
COL28A1-205ENST00000453441 ANKRD1Q15327 319 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms