RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 TNFRSF10DQ9UBN6 386 aa6.27□□□□□ -1.41
USP40-209ENST00000452724 EBF1Q9UH73 591 aa6.27□□□□□ -1.41
USP40-209ENST00000452724 SLC12A7Q9Y666 1083 aa6.27□□□□□ -1.41
USP40-209ENST00000452724 TEX51A0A1B0GUA7 166 aa6.26□□□□□ -1.41
USP40-209ENST00000452724 NUAK1O60285 661 aa6.26□□□□□ -1.41
USP40-209ENST00000452724 STK10O94804 968 aaKnown RBP6.26□□□□□ -1.41
USP40-209ENST00000452724 BMP8BP34820 402 aa6.26□□□□□ -1.41
USP40-209ENST00000452724 GTF2F1P35269 517 aaKnown RBP eCLIP6.26□□□□□ -1.41
USP40-209ENST00000452724 LINC00310P59036 64 aa6.26□□□□□ -1.41
USP40-209ENST00000452724 AUHQ13825 339 aaKnown RBP6.26□□□□□ -1.41
USP40-209ENST00000452724 BBS9Q3SYG4 887 aa6.26□□□□□ -1.41
USP40-209ENST00000452724 ADGRF1Q5T601 910 aa6.26□□□□□ -1.41
USP40-209ENST00000452724 GALNT18Q6P9A2 607 aa6.26□□□□□ -1.41
USP40-209ENST00000452724 NLRX1Q86UT6 975 aa6.26□□□□□ -1.41
USP40-209ENST00000452724 SIRT2Q8IXJ6 389 aa6.26□□□□□ -1.41
USP40-209ENST00000452724 CCDC144CPQ8IYA2 1237 aa6.26□□□□□ -1.41
USP40-209ENST00000452724 SMARCC1Q92922 1105 aaPredicted RBP6.26□□□□□ -1.41
USP40-209ENST00000452724 GFOD1Q9NXC2 390 aa6.26□□□□□ -1.41
USP40-209ENST00000452724 SUCOQ9UBS9 1254 aaKnown RBP6.26□□□□□ -1.41
USP40-209ENST00000452724 TAF6LQ9Y6J9 622 aa6.26□□□□□ -1.41
USP40-209ENST00000452724 TMEM82A0PJX8 343 aa6.25□□□□□ -1.41
USP40-209ENST00000452724 WTIPA6NIX2 430 aaPredicted RBP6.25□□□□□ -1.41
USP40-209ENST00000452724 HRKO00198 91 aa6.25□□□□□ -1.41
USP40-209ENST00000452724 MEIS1O00470 390 aa6.25□□□□□ -1.41
USP40-209ENST00000452724 ARL4AP40617 200 aa6.25□□□□□ -1.41
USP40-209ENST00000452724 PMS1P54277 932 aaKnown RBP6.25□□□□□ -1.41
USP40-209ENST00000452724 RTP1P59025 263 aa6.25□□□□□ -1.41
USP40-209ENST00000452724 DLG4P78352 724 aa6.25□□□□□ -1.41
USP40-209ENST00000452724 CWF19L1Q69YN2 538 aaKnown RBP6.25□□□□□ -1.41
USP40-209ENST00000452724 ARMC5Q96C12 935 aa6.25□□□□□ -1.41
USP40-209ENST00000452724 SHISA4Q96DD7 197 aa6.25□□□□□ -1.41
USP40-209ENST00000452724 HHIPL1Q96JK4 782 aa6.25□□□□□ -1.41
USP40-209ENST00000452724 CDADC1Q9BWV3 514 aa6.25□□□□□ -1.41
USP40-209ENST00000452724 PHAXQ9H814 394 aaKnown RBP6.25□□□□□ -1.41
USP40-209ENST00000452724 ACTR10Q9NZ32 417 aa6.25□□□□□ -1.41
USP40-209ENST00000452724 PPP1R1BQ9UD71 204 aaPredicted RBP6.25□□□□□ -1.41
USP40-209ENST00000452724 ZNF214Q9UL59 606 aaPredicted RBP6.25□□□□□ -1.41
USP40-209ENST00000452724 LTBP3Q9NS15 1303 aa6.25□□□□□ -1.41
USP40-209ENST00000452724 MYOCOSA0A1B0GUC4 107 aa6.24□□□□□ -1.41
USP40-209ENST00000452724 RFXAPO00287 272 aa6.24□□□□□ -1.41
USP40-209ENST00000452724 ABLIM1O14639 778 aa6.24□□□□□ -1.41
USP40-209ENST00000452724 GSNP06396 782 aa6.24□□□□□ -1.41
USP40-209ENST00000452724 PNLIPP16233 465 aa6.24□□□□□ -1.41
USP40-209ENST00000452724 LCE1DQ5T752 114 aa6.24□□□□□ -1.41
USP40-209ENST00000452724 ANKS3Q6ZW76 656 aa6.24□□□□□ -1.41
USP40-209ENST00000452724 AMIGO3Q86WK7 504 aa6.24□□□□□ -1.41
USP40-209ENST00000452724 C7orf61Q8IZ16 206 aa6.24□□□□□ -1.41
USP40-209ENST00000452724 HNRNPLLQ8WVV9 542 aaKnown RBP6.24□□□□□ -1.41
USP40-209ENST00000452724 DRC1Q96MC2 740 aa6.24□□□□□ -1.41
USP40-209ENST00000452724 SIRT5Q9NXA8 310 aa6.24□□□□□ -1.41
USP40-209ENST00000452724 R3HCC1Q9Y3T6 440 aaKnown RBP6.24□□□□□ -1.41
USP40-209ENST00000452724 C9IYK1 514 aa6.23□□□□□ -1.41
USP40-209ENST00000452724 ZNF205O95201 554 aa6.23□□□□□ -1.41
USP40-209ENST00000452724 GALK1P51570 392 aa6.23□□□□□ -1.41
USP40-209ENST00000452724 TMEM62Q0P6H9 643 aa6.23□□□□□ -1.41
USP40-209ENST00000452724 LAPTM5Q13571 262 aa6.23□□□□□ -1.41
USP40-209ENST00000452724 TDRD10Q5VZ19 366 aaKnown RBP6.23□□□□□ -1.41
USP40-209ENST00000452724 LCNL1Q6ZST4 164 aa6.23□□□□□ -1.41
USP40-209ENST00000452724 PPFIBP1Q86W92 1011 aa6.23□□□□□ -1.41
USP40-209ENST00000452724 CKAP2LQ8IYA6 745 aa6.23□□□□□ -1.41
USP40-209ENST00000452724 HIRIP3Q9BW71 556 aaPredicted RBP6.23□□□□□ -1.41
USP40-209ENST00000452724 CNOT6Q9ULM6 557 aaKnown RBP6.23□□□□□ -1.41
USP40-209ENST00000452724 PCDHB10Q9UN67 800 aa6.23□□□□□ -1.41
USP40-209ENST00000452724 A0A1W2PQ45 241 aaPredicted RBP6.22□□□□□ -1.41
USP40-209ENST00000452724 A0A1W2PQY0 241 aa6.22□□□□□ -1.41
USP40-209ENST00000452724 NOTOA8MTQ0 251 aa6.22□□□□□ -1.41
USP40-209ENST00000452724 KLF4O43474 513 aa6.22□□□□□ -1.41
USP40-209ENST00000452724 VAV1P15498 845 aa6.22□□□□□ -1.41
USP40-209ENST00000452724 SRSF3P84103 164 aaKnown RBP6.22□□□□□ -1.41
USP40-209ENST00000452724 SLC7A5Q01650 507 aa6.22□□□□□ -1.41
USP40-209ENST00000452724 GNPTABQ3T906 1256 aa6.22□□□□□ -1.41
USP40-209ENST00000452724 ZNF385BQ569K4 471 aa6.22□□□□□ -1.41
USP40-209ENST00000452724 NOL9Q5SY16 702 aaKnown RBP6.22□□□□□ -1.41
USP40-209ENST00000452724 LARP1BQ659C4 914 aaKnown RBP6.22□□□□□ -1.41
USP40-209ENST00000452724 NAT16Q8N8M0 369 aa6.22□□□□□ -1.41
USP40-209ENST00000452724 FAM86C1Q9NVL1 165 aa6.22□□□□□ -1.41
USP40-209ENST00000452724 MINPP1Q9UNW1 487 aa6.22□□□□□ -1.41
USP40-209ENST00000452724 GPR55Q9Y2T6 319 aaPredicted RBP6.22□□□□□ -1.41
USP40-209ENST00000452724 A0A1W2PQ27 194 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 A0A1W2PQ64 194 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 A0A1W2PQC6 194 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 A0A1W2PQD8 194 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 FADS2P1A8MWK0 482 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 TP53P04637 393 aaPredicted RBP6.21□□□□□ -1.42
USP40-209ENST00000452724 MPOP05164 745 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 NOP2P46087 812 aaKnown RBP6.21□□□□□ -1.42
USP40-209ENST00000452724 FXNQ16595 210 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 HSF5Q4G112 596 aaPredicted RBP6.21□□□□□ -1.42
USP40-209ENST00000452724 AXDND1Q5T1B0 1012 aaPredicted RBP6.21□□□□□ -1.42
USP40-209ENST00000452724 VHLLQ6RSH7 139 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 CRTC3Q6UUV7 619 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 ZPBP2Q6X784 338 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 TMEM151BQ8IW70 566 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 TRIM55Q9BYV6 548 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 IRF2BPLQ9H1B7 796 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 ERVK13-1Q9NX77 482 aa6.21□□□□□ -1.42
USP40-209ENST00000452724 CTSKP43235 329 aa6.2□□□□□ -1.42
USP40-209ENST00000452724 ERVFRD-1P60508 538 aa6.2□□□□□ -1.42
USP40-209ENST00000452724 CYP4F8P98187 520 aa6.2□□□□□ -1.42
USP40-209ENST00000452724 RBL2Q08999 1139 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms