RNA–Protein interactions for RNA: ENST00000452322.2

LINC00339-205, long intergenic non-protein coding RNA 339, human

TSL 3

Gene LINC00339, Length 1,391 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00339-205	ENST00000452322	HSPA1A	P0DMV8	641 aa	Known RBP	13.8	□□□□□ -0.2
LINC00339-205	ENST00000452322	HSPA1B	P0DMV9	641 aa	Known RBP	13.8	□□□□□ -0.2
LINC00339-205	ENST00000452322	CCNA1	P78396	465 aa		13.8	□□□□□ -0.2
LINC00339-205	ENST00000452322	SP3	Q02447	781 aa		13.8	□□□□□ -0.2
LINC00339-205	ENST00000452322	FUT2	Q10981	343 aa		13.8	□□□□□ -0.2
LINC00339-205	ENST00000452322	SCRN1	Q12765	414 aa		13.8	□□□□□ -0.2
LINC00339-205	ENST00000452322	CDC37	Q16543	378 aa	Predicted RBP	13.8	□□□□□ -0.2
LINC00339-205	ENST00000452322		Q3C1V9	767 aa		13.8	□□□□□ -0.2
LINC00339-205	ENST00000452322	CMTR1	Q8N1G2	835 aa	Known RBP	13.8	□□□□□ -0.2
LINC00339-205	ENST00000452322	GTF3C6	Q969F1	213 aa		13.8	□□□□□ -0.2
LINC00339-205	ENST00000452322	NCOA5	Q9HCD5	579 aa	Known RBP	13.8	□□□□□ -0.2
LINC00339-205	ENST00000452322	VAT1L	Q9HCJ6	419 aa		13.8	□□□□□ -0.2
LINC00339-205	ENST00000452322	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.8	□□□□□ -0.2
LINC00339-205	ENST00000452322	CPLX1	O14810	134 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	ZBTB5	O15062	677 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	PEX10	O60683	326 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	CD2BP2	O95400	341 aa	Known RBP	13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	ICAM1	P05362	532 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	IFNAR1	P17181	557 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	HOXD11	P31277	338 aa	Predicted RBP	13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	COPB2	P35606	906 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	STAT3	P40763	770 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	SNAP25	P60880	206 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	PLS1	Q14651	629 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	NTRK3	Q16288	839 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	QRICH1	Q2TAL8	776 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	SNRNP48	Q6IEG0	339 aa	Known RBP	13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	CCDC174	Q6PII3	467 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	CPLX2	Q6PUV4	134 aa	Known RBP	13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	RIOX2	Q8IUF8	465 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	CPXCR1	Q8N123	301 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	SHCBP1	Q8NEM2	672 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	RRP36	Q96EU6	259 aa	Known RBP	13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	PIGS	Q96S52	555 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	MOV10L1	Q9BXT6	1211 aa	Known RBP	13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	RAVER2	Q9HCJ3	691 aa	Known RBP	13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	TSKS	Q9UJT2	592 aa		13.79	□□□□□ -0.2
LINC00339-205	ENST00000452322	FOXN1	O15353	648 aa		13.78	□□□□□ -0.2
LINC00339-205	ENST00000452322	FKTN	O75072	461 aa		13.78	□□□□□ -0.2
LINC00339-205	ENST00000452322	SLC25A27	O95847	323 aa		13.78	□□□□□ -0.2
LINC00339-205	ENST00000452322	HOMER1	Q86YM7	354 aa		13.78	□□□□□ -0.2
LINC00339-205	ENST00000452322	CCDC82	Q8N4S0	544 aa		13.78	□□□□□ -0.2
LINC00339-205	ENST00000452322	ZNF296	Q8WUU4	475 aa	Predicted RBP	13.78	□□□□□ -0.2
LINC00339-205	ENST00000452322	AGBL1	Q96MI9	1066 aa		13.78	□□□□□ -0.2
LINC00339-205	ENST00000452322	RBM27	Q9P2N5	1060 aa	Known RBP	13.78	□□□□□ -0.2
LINC00339-205	ENST00000452322	SEC63	Q9UGP8	760 aa	Known RBP	13.78	□□□□□ -0.2
LINC00339-205	ENST00000452322	CCPG1	Q9ULG6	757 aa		13.78	□□□□□ -0.2
LINC00339-205	ENST00000452322	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.77	□□□□□ -0.2
LINC00339-205	ENST00000452322	PNMA6F	A0A0J9YX94	578 aa		13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	CDKL5	O76039	1030 aa		13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	HSPA8	P11142	646 aa	Known RBP	13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	MAPK4	P31152	587 aa		13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	CTCF	P49711	727 aa	Predicted RBP	13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	LACTB	P83111	547 aa	Predicted RBP	13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	TRAF1	Q13077	416 aa		13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	TKFC	Q3LXA3	575 aa		13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	FBXO11	Q86XK2	927 aa		13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	NECAB1	Q8N987	351 aa		13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	AMN	Q9BXJ7	453 aa		13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	RNF26	Q9BY78	433 aa	Predicted RBP	13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	PORCN	Q9H237	461 aa		13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	MROH8	Q9H579	483 aa		13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	RIPK3	Q9Y572	518 aa		13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	MYH6	P13533	1939 aa		13.77	□□□□□ -0.21
LINC00339-205	ENST00000452322	PRPF3	O43395	683 aa	Known RBP	13.76	□□□□□ -0.21
LINC00339-205	ENST00000452322	ERCC3	P19447	782 aa		13.76	□□□□□ -0.21
LINC00339-205	ENST00000452322	ST3GAL1	Q11201	340 aa		13.76	□□□□□ -0.21
LINC00339-205	ENST00000452322	KIF22	Q14807	665 aa		13.76	□□□□□ -0.21
LINC00339-205	ENST00000452322	NCAPG2	Q86XI2	1143 aa		13.76	□□□□□ -0.21
LINC00339-205	ENST00000452322	CCAR1	Q8IX12	1150 aa	Known RBP	13.76	□□□□□ -0.21
LINC00339-205	ENST00000452322	PHKB	Q93100	1093 aa		13.76	□□□□□ -0.21
LINC00339-205	ENST00000452322	SNX21	Q969T3	373 aa		13.76	□□□□□ -0.21
LINC00339-205	ENST00000452322	ERO1A	Q96HE7	468 aa		13.76	□□□□□ -0.21
LINC00339-205	ENST00000452322	TMX3	Q96JJ7	454 aa		13.76	□□□□□ -0.21
LINC00339-205	ENST00000452322	EFCC1	Q9HA90	598 aa		13.76	□□□□□ -0.21
LINC00339-205	ENST00000452322	FBXO40	Q9UH90	709 aa		13.76	□□□□□ -0.21
LINC00339-205	ENST00000452322	MGAM	O43451	1857 aa		13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	PPP1R11	O60927	126 aa	Predicted RBP	13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	FMNL1	O95466	1100 aa	Predicted RBP	13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	ALAS1	P13196	640 aa		13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	FCGRT	P55899	365 aa		13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	AKAP17A	Q02040	695 aa	Known RBP	13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	USH1G	Q495M9	461 aa		13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	CCDC83	Q8IWF9	413 aa		13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	TRIM22	Q8IYM9	498 aa		13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	CHST13	Q8NET6	341 aa		13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	PIBF1	Q8WXW3	757 aa		13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	SLC26A6	Q9BXS9	759 aa		13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	RNF146	Q9NTX7	359 aa		13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322		V9GY48	417 aa	Predicted RBP	13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	ABCB11	O95342	1321 aa		13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	STK36	Q9NRP7	1315 aa		13.75	□□□□□ -0.21
LINC00339-205	ENST00000452322	hCG_1642624	A0A1W2PR95	340 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	hCG_1984214	I3L0E3	225 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	DEXI	O95424	95 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	CTDNEP1	O95476	244 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	CTGF	P29279	349 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	PSMC4	P43686	418 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	SLC4A3	P48751	1232 aa		13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 21 ms