RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 LONRF2Q1L5Z9 754 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 SBK1Q52WX2 424 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 FAM47AQ5JRC9 791 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 SLC35F6Q8N357 371 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 MSANTD4Q8NCY6 345 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 ANKRD20A12PQ8NF67 263 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 ANKZF1Q9H8Y5 726 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 ATP8A2Q9NTI2 1148 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 TAB2Q9NYJ8 693 aa18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 ARPP21Q9UBL0 812 aaPredicted RBP18.48■□□□□ 0.55
CLCNKA-203ENST00000439316 ERICH4A6NGS2 130 aa18.47■□□□□ 0.55
CLCNKA-203ENST00000439316 UFL1O94874 794 aa18.47■□□□□ 0.55
CLCNKA-203ENST00000439316 VEGFAP15692 232 aaPredicted RBP18.47■□□□□ 0.55
CLCNKA-203ENST00000439316 CALML3P27482 149 aa18.47■□□□□ 0.55
CLCNKA-203ENST00000439316 ARHGAP25P42331 645 aa18.47■□□□□ 0.55
CLCNKA-203ENST00000439316 CYP26C1Q6V0L0 522 aa18.47■□□□□ 0.55
CLCNKA-203ENST00000439316 HNRNPLLQ8WVV9 542 aaKnown RBP18.47■□□□□ 0.55
CLCNKA-203ENST00000439316 VPS16Q9H269 839 aa18.47■□□□□ 0.55
CLCNKA-203ENST00000439316 MYO1AQ9UBC5 1043 aa18.47■□□□□ 0.55
CLCNKA-203ENST00000439316 RAB21Q9UL25 225 aa18.47■□□□□ 0.55
CLCNKA-203ENST00000439316 RNF225M0QZC1 329 aaPredicted RBP18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 MAP2K7O14733 419 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 POLR3GO15318 223 aaPredicted RBP18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 CDC25AP30304 524 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 TUBB4BP68371 445 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 KIF4BQ2VIQ3 1234 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 RCSD1Q6JBY9 416 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 TMED8Q6PL24 325 aaPredicted RBP18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 MASTLQ96GX5 879 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 ZSWIM4Q9H7M6 989 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 SH3GLB2Q9NR46 395 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 GGA1Q9UJY5 639 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 LRRC37AA6NMS7 1700 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 CYP2D6P10635 497 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 ATP2B4P23634 1241 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 KIF5BP33176 963 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 USP5P45974 858 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 TMC4Q7Z404 712 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 SP8Q8IXZ3 490 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 BLIDQ8IZY5 108 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 NUP88Q99567 741 aaPredicted RBP18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 NAPGQ99747 312 aaPredicted RBP18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 PODXL2Q9NZ53 605 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 PUF60Q9UHX1 559 aaKnown RBP18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 GDAQ9Y2T3 454 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 FAM205AQ6ZU69 1335 aa18.46■□□□□ 0.55
CLCNKA-203ENST00000439316 ALDH1B1P30837 517 aa18.45■□□□□ 0.54
CLCNKA-203ENST00000439316 ZNF622Q969S3 477 aaKnown RBP eCLIP18.45■□□□□ 0.54
CLCNKA-203ENST00000439316 POLLQ9UGP5 575 aa18.45■□□□□ 0.54
CLCNKA-203ENST00000439316 JAG2Q9Y219 1238 aa18.45■□□□□ 0.54
CLCNKA-203ENST00000439316 ATP6V0A2Q9Y487 856 aa18.45■□□□□ 0.54
CLCNKA-203ENST00000439316 BAZ2BQ9UIF8 2168 aaKnown RBP18.45■□□□□ 0.54
CLCNKA-203ENST00000439316 H7C1D1 291 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 STAT6P42226 847 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 PRCPP42785 496 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 WHAMMP3Q1A5X7 153 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 C2CD5Q86YS7 1000 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 CCDC125Q86Z20 511 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 IRF2BP1Q8IU81 584 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 ADSSL1Q8N142 457 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 TBC1D16Q8TBP0 767 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 CALCOCO1Q9P1Z2 691 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 PCDHA4Q9UN74 947 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 TSPY2A6NKD2 308 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 ABL1P00519 1130 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 LTBP1Q14766 1721 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 WWC2Q6AWC2 1192 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 C15orf52Q6ZUT6 534 aaKnown RBP18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 DISC1Q9NRI5 854 aa18.44■□□□□ 0.54
CLCNKA-203ENST00000439316 CCDC88AQ3V6T2 1871 aa18.43■□□□□ 0.54
CLCNKA-203ENST00000439316 H0YIN7 160 aa18.43■□□□□ 0.54
CLCNKA-203ENST00000439316 M0R2N6 131 aa18.43■□□□□ 0.54
CLCNKA-203ENST00000439316 KRT9P35527 623 aa18.43■□□□□ 0.54
CLCNKA-203ENST00000439316 BEND6Q5SZJ8 279 aaPredicted RBP18.43■□□□□ 0.54
CLCNKA-203ENST00000439316 ZNF804AQ7Z570 1209 aa18.43■□□□□ 0.54
CLCNKA-203ENST00000439316 PNKPQ96T60 521 aa18.43■□□□□ 0.54
CLCNKA-203ENST00000439316 C6orf229H3BNL8 230 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 PARP1P09874 1014 aaKnown RBP18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 PRDX5P30044 214 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 NT5C2P49902 561 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 AMPD2Q01433 879 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 UBXN1Q04323 297 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 KCNB1Q14721 858 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 NAALADL2Q58DX5 795 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 MSL3Q8N5Y2 521 aaKnown RBP18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 A0A1W2PQC6 194 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 LGALS16A8MUM7 142 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 CHRNA5P30532 468 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 DAGLBQ8NCG7 672 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 ANKS1AQ92625 1134 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 GPKOWQ92917 476 aaPredicted RBP eCLIP18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 SLF1Q9BQI6 1058 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 KAT14Q9H8E8 782 aa18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 ZCCHC17Q9NP64 241 aaKnown RBP18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 REXO2Q9Y3B8 237 aaKnown RBP18.42■□□□□ 0.54
CLCNKA-203ENST00000439316 H3BQF6 201 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 MYL1P05976 194 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 SEMA3FQ13275 785 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 GRM4Q14833 912 aa18.41■□□□□ 0.54
CLCNKA-203ENST00000439316 DGKHQ86XP1 1220 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms