RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 KRT5P13647 590 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 HSPA1LP34931 641 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 GPSM2P81274 684 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 NUP58Q9BVL2 599 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 CCDC94Q9BW85 323 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-205ENST00000439160 KIAA1024Q9UPX6 916 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 NCBP1Q09161 790 aaKnown RBP13.67□□□□□ -0.22
TCOF1-205ENST00000439160 SMCR8Q8TEV9 937 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-205ENST00000439160 DESI2Q9BSY9 194 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 LY9Q9HBG7 655 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 PODXL2Q9NZ53 605 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 TAF6LQ9Y6J9 622 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 MROH1Q8NDA8 1641 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 RPAP1Q9BWH6 1393 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-205ENST00000439160 EVCP57679 992 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 RNASE9P60153 205 aaKnown RBP13.67□□□□□ -0.22
TCOF1-205ENST00000439160 RRAGAQ7L523 313 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 STK24Q9Y6E0 443 aa13.67□□□□□ -0.22
TCOF1-205ENST00000439160 ZNF609O15014 1411 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 RFX7Q2KHR2 1363 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 BMP3P12645 472 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 MAGEA1P43355 309 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 ARHGEF16Q5VV41 709 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 TMTC3Q6ZXV5 915 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 MRFAP1L1Q96HT8 127 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 AS3MTQ9HBK9 375 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 DKC1O60832 514 aaKnown RBP eCLIP13.66□□□□□ -0.22
TCOF1-205ENST00000439160 SLC9C1Q4G0N8 1177 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 SPATA1Q5VX52 437 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 PSMB7Q99436 277 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 TMEM47Q9BQJ4 181 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 CARD6Q9BX69 1037 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 TDRD3Q9H7E2 651 aaKnown RBP13.66□□□□□ -0.22
TCOF1-205ENST00000439160 SLFN12Q8IYM2 578 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 GSDMAQ96QA5 445 aa13.66□□□□□ -0.22
TCOF1-205ENST00000439160 STRN3Q13033 797 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 ALX1Q15699 326 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 GPR162Q16538 588 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 UBE2SQ16763 222 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 SLC27A3Q5K4L6 730 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 FAM26FQ5R3K3 315 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 SULF1Q8IWU6 871 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 TDRD7Q8NHU6 1098 aaKnown RBP13.65□□□□□ -0.22
TCOF1-205ENST00000439160 JAKMIP2Q96AA8 810 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 AZI2Q9H6S1 392 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 MEGF6O75095 1541 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 COL3A1P02461 1466 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-205ENST00000439160 FOSP01100 380 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-205ENST00000439160 SLFN14P0C7P3 912 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 TNFAIP3P21580 790 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 PRPHP41219 470 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 CRKP46108 304 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 CYP2J2P51589 502 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 PABPC4Q13310 644 aaKnown RBP eCLIP13.65□□□□□ -0.223e-6■■■■□ 20.4
TCOF1-205ENST00000439160 PANK4Q9NVE7 773 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 SF3B3Q15393 1217 aaKnown RBP13.65□□□□□ -0.22
TCOF1-205ENST00000439160 ASIC2Q16515 512 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 TYW1BQ6NUM6 668 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 GLG1Q92896 1179 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 NAPGQ99747 312 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-205ENST00000439160 SPATA31A5Q5VU36 1347 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 SPATA31A7Q8IWB4 1347 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 ACTN2P35609 894 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 SNAP25P60880 206 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 PLCB3Q01970 1234 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 PPP2R3AQ06190 1150 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 KLHL30Q0D2K2 578 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 TSGA10IPQ3SY00 556 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 VWA3BQ502W6 1294 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 WDR44Q5JSH3 913 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 KRT222Q8N1A0 295 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 EXOC7Q9UPT5 735 aa13.65□□□□□ -0.22
TCOF1-205ENST00000439160 UTYO14607 1347 aa13.65□□□□□ -0.23
TCOF1-205ENST00000439160 NTSR2O95665 410 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 GH2P01242 217 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 ANKRD35Q8N283 1001 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 IFT81Q8WYA0 676 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 TIGD1Q96MW7 591 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 LMAN1P49257 510 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 MCTP2Q6DN12 878 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 DPY19L2Q6NUT2 758 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 PODNQ7Z5L7 613 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 OR8K1Q8NGG5 319 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 OXER1Q8TDS5 423 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 SRPRBQ9Y5M8 271 aaKnown RBP13.64□□□□□ -0.23
TCOF1-205ENST00000439160 NEURL4Q96JN8 1562 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 PXDNLA1KZ92 1463 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 CACNB1Q02641 598 aaPredicted RBP13.64□□□□□ -0.23
TCOF1-205ENST00000439160 PRR5LQ6MZQ0 368 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 CCDC50Q8IVM0 306 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 ARHGEF28Q8N1W1 1705 aaKnown RBP13.64□□□□□ -0.23
TCOF1-205ENST00000439160 LARP4BQ92615 738 aaKnown RBP13.64□□□□□ -0.23
TCOF1-205ENST00000439160 ATP6V0A2Q9Y487 856 aa13.64□□□□□ -0.23
TCOF1-205ENST00000439160 TERF1P54274 439 aa13.63□□□□□ -0.23
TCOF1-205ENST00000439160 AOC3Q16853 763 aa13.63□□□□□ -0.23
TCOF1-205ENST00000439160 LRRC8AQ8IWT6 810 aa13.63□□□□□ -0.23
TCOF1-205ENST00000439160 CERKQ8TCT0 537 aa13.63□□□□□ -0.23
TCOF1-205ENST00000439160 SHTN1A0MZ66 631 aa13.63□□□□□ -0.23
TCOF1-205ENST00000439160 USP17L5A8MUK1 530 aa13.63□□□□□ -0.23
TCOF1-205ENST00000439160 ZBTB7AO95365 584 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms