RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 IGHA2P01877 340 aa17.81■□□□□ 0.44
LIMS3-201ENST00000437679 SNHG28P0DPA3 235 aa17.81■□□□□ 0.44
LIMS3-201ENST00000437679 SNAP25P60880 206 aa17.81■□□□□ 0.44
LIMS3-201ENST00000437679 ZNF792Q3KQV3 632 aa17.81■□□□□ 0.44
LIMS3-201ENST00000437679 GPATCH4Q5T3I0 446 aaKnown RBP17.81■□□□□ 0.44
LIMS3-201ENST00000437679 IFIT1BQ5T764 474 aaKnown RBP17.81■□□□□ 0.44
LIMS3-201ENST00000437679 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.81■□□□□ 0.44
LIMS3-201ENST00000437679 UBE2Q1Q7Z7E8 422 aa17.81■□□□□ 0.44
LIMS3-201ENST00000437679 NCOA7Q8NI08 942 aa17.81■□□□□ 0.44
LIMS3-201ENST00000437679 AGBL1Q96MI9 1066 aa17.81■□□□□ 0.44
LIMS3-201ENST00000437679 ACAD9Q9H845 621 aa17.81■□□□□ 0.44
LIMS3-201ENST00000437679 OGDHLQ9ULD0 1010 aa17.81■□□□□ 0.44
LIMS3-201ENST00000437679 E7EWF7 191 aa17.8■□□□□ 0.44
LIMS3-201ENST00000437679 MSCO60682 206 aa17.8■□□□□ 0.44
LIMS3-201ENST00000437679 ALAS1P13196 640 aa17.8■□□□□ 0.44
LIMS3-201ENST00000437679 CYBAP13498 195 aa17.8■□□□□ 0.44
LIMS3-201ENST00000437679 CYB5R4Q7L1T6 521 aa17.8■□□□□ 0.44
LIMS3-201ENST00000437679 TRERF1Q96PN7 1200 aa17.8■□□□□ 0.44
LIMS3-201ENST00000437679 HTATIP2Q9BUP3 242 aa17.8■□□□□ 0.44
LIMS3-201ENST00000437679 LSG1Q9H089 658 aaKnown RBP17.8■□□□□ 0.44
LIMS3-201ENST00000437679 RANBP17Q9H2T7 1088 aaKnown RBP17.8■□□□□ 0.44
LIMS3-201ENST00000437679 ANO2Q9NQ90 1003 aa17.8■□□□□ 0.44
LIMS3-201ENST00000437679 RNF146Q9NTX7 359 aa17.8■□□□□ 0.44
LIMS3-201ENST00000437679 CCPG1Q9ULG6 757 aa17.8■□□□□ 0.44
LIMS3-201ENST00000437679 ERICH2A1L162 156 aa17.79■□□□□ 0.44
LIMS3-201ENST00000437679 CDC45O75419 566 aa17.79■□□□□ 0.44
LIMS3-201ENST00000437679 ICAM1P05362 532 aa17.79■□□□□ 0.44
LIMS3-201ENST00000437679 LHX8Q68G74 356 aa17.79■□□□□ 0.44
LIMS3-201ENST00000437679 NECAB2Q7Z6G3 386 aa17.79■□□□□ 0.44
LIMS3-201ENST00000437679 TINF2Q9BSI4 451 aa17.79■□□□□ 0.44
LIMS3-201ENST00000437679 DDX20Q9UHI6 824 aaKnown RBP17.79■□□□□ 0.44
LIMS3-201ENST00000437679 DNAJC25-GNG10A0A024R161 153 aa17.78■□□□□ 0.44
LIMS3-201ENST00000437679 GOLGA8HP0CJ92 632 aa17.78■□□□□ 0.44
LIMS3-201ENST00000437679 SART3Q15020 963 aaKnown RBP17.78■□□□□ 0.44
LIMS3-201ENST00000437679 ASPRV1Q53RT3 343 aa17.78■□□□□ 0.44
LIMS3-201ENST00000437679 PRPF38BQ5VTL8 546 aaKnown RBP17.78■□□□□ 0.44
LIMS3-201ENST00000437679 ERICH6BQ5W0A0 696 aa17.78■□□□□ 0.44
LIMS3-201ENST00000437679 MSL3Q8N5Y2 521 aaKnown RBP17.78■□□□□ 0.44
LIMS3-201ENST00000437679 TRPV1Q8NER1 839 aa17.78■□□□□ 0.44
LIMS3-201ENST00000437679 PAWRQ96IZ0 340 aaKnown RBP17.78■□□□□ 0.44
LIMS3-201ENST00000437679 NRBP1Q9UHY1 535 aa17.78■□□□□ 0.44
LIMS3-201ENST00000437679 PNMA2Q9UL42 364 aa17.78■□□□□ 0.44
LIMS3-201ENST00000437679 TAF6LQ9Y6J9 622 aa17.78■□□□□ 0.44
LIMS3-201ENST00000437679 IFIT3O14879 490 aaKnown RBP17.77■□□□□ 0.44
LIMS3-201ENST00000437679 PARP1P09874 1014 aaKnown RBP17.77■□□□□ 0.44
LIMS3-201ENST00000437679 SEC23AQ15436 765 aa17.77■□□□□ 0.44
LIMS3-201ENST00000437679 PRAMEF19Q5SWL8 479 aa17.77■□□□□ 0.44
LIMS3-201ENST00000437679 STOX1Q6ZVD7 989 aa17.77■□□□□ 0.44
LIMS3-201ENST00000437679 ZNF467Q7Z7K2 595 aaPredicted RBP17.77■□□□□ 0.44
LIMS3-201ENST00000437679 DPF3Q92784 378 aa17.77■□□□□ 0.44
LIMS3-201ENST00000437679 PPP4R2Q9NY27 417 aa17.77■□□□□ 0.44
LIMS3-201ENST00000437679 PFASO15067 1338 aa17.76■□□□□ 0.43
LIMS3-201ENST00000437679 POTEB2H3BUK9 544 aa17.76■□□□□ 0.43
LIMS3-201ENST00000437679 SEPT4O43236 478 aa17.76■□□□□ 0.43
LIMS3-201ENST00000437679 DIS3LQ8TF46 1054 aaKnown RBP17.76■□□□□ 0.43
LIMS3-201ENST00000437679 UBA5Q9GZZ9 404 aa17.76■□□□□ 0.43
LIMS3-201ENST00000437679 A1CFQ9NQ94 594 aaKnown RBP17.76■□□□□ 0.43
LIMS3-201ENST00000437679 CNPY2Q9Y2B0 182 aa17.76■□□□□ 0.43
LIMS3-201ENST00000437679 SMCHD1A6NHR9 2005 aa17.76■□□□□ 0.43
LIMS3-201ENST00000437679 SYNGAP1Q96PV0 1343 aa17.75■□□□□ 0.43
LIMS3-201ENST00000437679 CEP290O15078 2479 aa17.75■□□□□ 0.43
LIMS3-201ENST00000437679 SLC27A2O14975 620 aa17.75■□□□□ 0.43
LIMS3-201ENST00000437679 WTAPQ15007 396 aa17.75■□□□□ 0.43
LIMS3-201ENST00000437679 MUM1L1Q5H9M0 696 aa17.75■□□□□ 0.43
LIMS3-201ENST00000437679 RNF20Q5VTR2 975 aa17.75■□□□□ 0.43
LIMS3-201ENST00000437679 CREB3L3Q68CJ9 461 aa17.75■□□□□ 0.43
LIMS3-201ENST00000437679 MAMDC4Q6UXC1 1216 aa17.75■□□□□ 0.43
LIMS3-201ENST00000437679 C11orf49Q9H6J7 331 aa17.75■□□□□ 0.43
LIMS3-201ENST00000437679 FRMPD3Q5JV73 1810 aa17.75■□□□□ 0.43
LIMS3-201ENST00000437679 WDR19Q8NEZ3 1342 aa17.74■□□□□ 0.43
LIMS3-201ENST00000437679 DHX16O60231 1041 aaKnown RBP17.74■□□□□ 0.43
LIMS3-201ENST00000437679 MNX1P50219 401 aaPredicted RBP17.74■□□□□ 0.43
LIMS3-201ENST00000437679 NECTIN1Q15223 517 aa17.74■□□□□ 0.43
LIMS3-201ENST00000437679 TMEM67Q5HYA8 995 aa17.74■□□□□ 0.43
LIMS3-201ENST00000437679 NSMFQ6X4W1 530 aa17.74■□□□□ 0.43
LIMS3-201ENST00000437679 CHST3Q7LGC8 479 aa17.74■□□□□ 0.43
LIMS3-201ENST00000437679 MB21D2Q8IYB1 491 aaPredicted RBP17.74■□□□□ 0.43
LIMS3-201ENST00000437679 CPVLQ9H3G5 476 aa17.74■□□□□ 0.43
LIMS3-201ENST00000437679 TAL1P17542 331 aaPredicted RBP17.73■□□□□ 0.43
LIMS3-201ENST00000437679 CDC37Q16543 378 aaPredicted RBP17.73■□□□□ 0.43
LIMS3-201ENST00000437679 ANO1Q5XXA6 986 aa17.73■□□□□ 0.43
LIMS3-201ENST00000437679 ADGRF4Q8IZF3 695 aa17.73■□□□□ 0.43
LIMS3-201ENST00000437679 FAM133AQ8N9E0 248 aa17.73■□□□□ 0.43
LIMS3-201ENST00000437679 ARRDC4Q8NCT1 418 aa17.73■□□□□ 0.43
LIMS3-201ENST00000437679 CYP39A1Q9NYL5 469 aa17.73■□□□□ 0.43
LIMS3-201ENST00000437679 MCM3APO60318 1980 aa17.72■□□□□ 0.43
LIMS3-201ENST00000437679 SNAI1O95863 264 aaPredicted RBP17.72■□□□□ 0.43
LIMS3-201ENST00000437679 ZNF865P0CJ78 1059 aaPredicted RBP17.72■□□□□ 0.43
LIMS3-201ENST00000437679 RARBP10826 455 aa17.72■□□□□ 0.43
LIMS3-201ENST00000437679 AKR1A1P14550 325 aa17.72■□□□□ 0.43
LIMS3-201ENST00000437679 MCM5P33992 734 aa17.72■□□□□ 0.43
LIMS3-201ENST00000437679 ANTXR2P58335 489 aa17.72■□□□□ 0.43
LIMS3-201ENST00000437679 CNTN2Q02246 1040 aa17.72■□□□□ 0.43
LIMS3-201ENST00000437679 CATIPQ7Z7H3 387 aa17.72■□□□□ 0.43
LIMS3-201ENST00000437679 FGD4Q96M96 766 aa17.72■□□□□ 0.43
LIMS3-201ENST00000437679 MTA3Q9BTC8 594 aa17.72■□□□□ 0.43
LIMS3-201ENST00000437679 VAT1LQ9HCJ6 419 aa17.72■□□□□ 0.43
LIMS3-201ENST00000437679 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.72■□□□□ 0.43
LIMS3-201ENST00000437679 ZHX1Q9UKY1 873 aaPredicted RBP17.72■□□□□ 0.43
LIMS3-201ENST00000437679 NR2E3Q9Y5X4 410 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms