RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CHMP2AO43633 222 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 BASP1P80723 227 aaKnown RBP7.84□□□□□ -1.15
VPS53-204ENST00000437048 TBCCQ15814 346 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 PDP2Q9P2J9 529 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 BIN2Q9UBW5 565 aaPredicted RBP7.84□□□□□ -1.15
VPS53-204ENST00000437048 ABCF2Q9UG63 623 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 PCDHB13Q9Y5F0 798 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 POTEAQ6S8J7 498 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 DDX21Q9NR30 783 aaKnown RBP eCLIP7.84□□□□□ -1.15
VPS53-204ENST00000437048 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.84□□□□□ -1.15
VPS53-204ENST00000437048 EEF1DP29692 281 aaKnown RBP7.84□□□□□ -1.15
VPS53-204ENST00000437048 CREB3L3Q68CJ9 461 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 NEK9Q8TD19 979 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 CABP2Q9NPB3 220 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 LMBRD1Q9NUN5 540 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 APOEP02649 317 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 PCGF5Q86SE9 256 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 RBM42Q9BTD8 480 aaKnown RBP7.84□□□□□ -1.15
VPS53-204ENST00000437048 MYO1CO00159 1063 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 ARL1P40616 181 aaPredicted RBP7.84□□□□□ -1.15
VPS53-204ENST00000437048 MAPRE2Q15555 327 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 DCAF8L1A6NGE4 600 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 SPATA1Q5VX52 437 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 PAG1Q9NWQ8 432 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 PPP2R2CQ9Y2T4 447 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 MORC2Q9Y6X9 1032 aaPredicted RBP7.84□□□□□ -1.15
VPS53-204ENST00000437048 NAPAP54920 295 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 MED21Q13503 144 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 RNF207Q6ZRF8 634 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 SESTD1Q86VW0 696 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 HACE1Q8IYU2 909 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 ZNF653Q96CK0 615 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 DSCC1Q9BVC3 393 aa7.84□□□□□ -1.15
VPS53-204ENST00000437048 RCAN1P53805 252 aa7.84□□□□□ -1.16
VPS53-204ENST00000437048 CYLC2Q14093 348 aaPredicted RBP7.84□□□□□ -1.16
VPS53-204ENST00000437048 POLR3EQ9NVU0 708 aa7.84□□□□□ -1.16
VPS53-204ENST00000437048 KRIT1O00522 736 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 SLC26A4O43511 780 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 LONP1P36776 959 aaKnown RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 MDM2Q00987 491 aaPredicted RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 SEPT8Q92599 483 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 TXNDC9O14530 226 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 SPAG7O75391 227 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 CDH2P19022 906 aaPredicted RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 CBX8Q9HC52 389 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 CDK13Q14004 1512 aaKnown RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 C16orf96A6NNT2 1141 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 CCPG1Q9ULG6 757 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 TRAF5O00463 557 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 TSPY3P0CV98 308 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 TSPY8P0CW00 308 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 NR1D1P20393 614 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 ATP6V1E1P36543 226 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 NRDE2Q9H7Z3 1164 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 PPARGP37231 505 aaPredicted RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 DNA2P51530 1060 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 FLOT2Q14254 428 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 RARS2Q5T160 578 aaKnown RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 RPGRQ92834 1020 aaKnown RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 NYXQ9GZU5 481 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 SPINK5Q9NQ38 1064 aaPredicted RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 RPAP1Q9BWH6 1393 aaPredicted RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 CCDC22O60826 627 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 AK2P54819 239 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 PURAQ00577 322 aaKnown RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 GRIN1Q05586 938 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 POLR3CQ9BUI4 534 aaPredicted RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 FLT4P35916 1363 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 RFX7Q2KHR2 1363 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 MCF2LO15068 1137 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 RBM5P52756 815 aaKnown RBP eCLIP7.83□□□□□ -1.16
VPS53-204ENST00000437048 PLEKHM2Q8IWE5 1019 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 SLC12A5Q9H2X9 1139 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 CHCHD3Q9NX63 227 aaKnown RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 AREL1O15033 823 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 KRT10P13645 584 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 Q6ZUG5 572 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 FRA10AC1Q70Z53 315 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 SCYL3Q8IZE3 742 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 ATP6V0A1Q93050 837 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 PPP1R2P1Q96PQ5 205 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 MCM7P33993 719 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 TRADDQ15628 312 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 TSC22D1Q15714 1073 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 RINT1Q6NUQ1 792 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 RAB44Q7Z6P3 723 aaPredicted RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 FAM186BQ8IYM0 893 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 ARL2BPQ9Y2Y0 163 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 STRNO43815 780 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 PDE1CQ14123 709 aaPredicted RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 DZIP3Q86Y13 1208 aaKnown RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 RHOT2Q8IXI1 618 aa7.83□□□□□ -1.16
VPS53-204ENST00000437048 ALKBH8Q96BT7 664 aaKnown RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 EPN1Q9Y6I3 576 aaPredicted RBP7.83□□□□□ -1.16
VPS53-204ENST00000437048 HOXB6P17509 224 aaKnown RBP7.82□□□□□ -1.16
VPS53-204ENST00000437048 SERPINB6P35237 376 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 SNX29Q8TEQ0 813 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 RAPGEF6Q8TEU7 1601 aa7.82□□□□□ -1.16
VPS53-204ENST00000437048 ZSCAN29Q8IWY8 852 aaPredicted RBP7.82□□□□□ -1.16
VPS53-204ENST00000437048 TOPBP1Q92547 1522 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms