RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 QTRT2Q9H974 415 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 SNX14Q9Y5W7 946 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 RPS6KA1Q15418 735 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 SCYL2Q6P3W7 929 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 IPO11Q9UI26 975 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 XDHP47989 1333 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 E9PCH4 1651 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 SAT1P21673 171 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 SCYL1Q96KG9 808 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 RILPQ96NA2 401 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 MYH2Q9UKX2 1941 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 TTC31Q49AM3 519 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 CCDC84Q86UT8 332 aaPredicted RBP13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 RAB20Q9NX57 234 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 CLTCL1P53675 1640 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 NXNQ6DKJ4 435 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 ARFGAP2Q8N6H7 521 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 RSRC1Q96IZ7 334 aaKnown RBP13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 ZNF804BA4D1E1 1349 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 RINT1Q6NUQ1 792 aa13.24□□□□□ -0.29
CCDC88A-207ENST00000436346 ESYT2A0FGR8 921 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 GTF2A1P52655 376 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 MTX1Q13505 466 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 KRT40Q6A162 431 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 PLEKHA4Q9H4M7 779 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 ZKSCAN5Q9Y2L8 839 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 TMEM232C9JQI7 657 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 STAT2P52630 851 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 U2AF1L4Q8WU68 220 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 TRIM56Q9BRZ2 755 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 TUBBP07437 444 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 BLIDQ8IZY5 108 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 TMEM191BP0C7N4 346 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 TRMT44Q8IYL2 757 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 TSKSQ9UJT2 592 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 PCDHA12Q9UN75 941 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 PTPROQ16827 1216 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 RAB17Q9H0T7 212 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 LRFN2Q9ULH4 789 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 ZNF772Q68DY9 489 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 RYBPQ8N488 228 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 HNRNPDLO14979 420 aaKnown RBP13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 BUB1BO60566 1050 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 ARHGEF6Q15052 776 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 TMCO4Q5TGY1 634 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 STAMQ92783 540 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 CNKSR1Q969H4 720 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 A6NJR5 290 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 CCND2P30279 289 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 CCNA1P78396 465 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 KCTD2Q14681 263 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 PPP2R5AQ15172 486 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 LRCH2Q5VUJ6 765 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 NOSTRINQ8IVI9 506 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 DCLK2Q8N568 766 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 MLKLQ8NB16 471 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 NLRP7Q8WX94 980 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 PCDHA1Q9Y5I3 950 aa13.23□□□□□ -0.29
CCDC88A-207ENST00000436346 SLC4A1P02730 911 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 PNMA1Q8ND90 353 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 AMFRQ9UKV5 643 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 NFE2L3Q9Y4A8 694 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 PFDN6O15212 129 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 WDR46O15213 610 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 TLR3O15455 904 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 FBXO11Q86XK2 927 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 CASZ1Q86V15 1759 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 MKRN3Q13064 507 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 GBP6Q6ZN66 633 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 TMEM2Q9UHN6 1383 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 USP17L12C9JPN9 530 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 USP17L21D6R901 530 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 SGSM2O43147 1006 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 CTAGE3PQ8IX95 158 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 CACNA2D3Q8IZS8 1091 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 CCDC68Q9H2F9 335 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 URB1O60287 2271 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 JAK2O60674 1132 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 KCTD1Q719H9 257 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 AP5M1Q9H0R1 490 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 ATP8A2Q9NTI2 1148 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 RABGAP1Q9Y3P9 1069 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 PDE6AP16499 860 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 XPAP23025 273 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 PDZD4Q76G19 769 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 TEKT3Q9BXF9 490 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 NUCKS1Q9H1E3 243 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 KIAA0232Q92628 1395 aa13.22□□□□□ -0.29
CCDC88A-207ENST00000436346 GOLGA8HP0CJ92 632 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 FAM135BQ49AJ0 1406 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 PARD3BQ8TEW8 1205 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 OSBPP22059 807 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 CHRNDQ07001 517 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 KAZNQ674X7 775 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 TBX22Q9Y458 520 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 CLRN2A0PK11 232 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 TTLL1O95922 423 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 DSCC1Q9BVC3 393 aa13.21□□□□□ -0.29
CCDC88A-207ENST00000436346 STAT1P42224 750 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms