RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 USP17L2Q6R6M4 530 aa13.02□□□□□ -0.33
LINC00539-203ENST00000434601 SIAH1Q8IUQ4 282 aa13.02□□□□□ -0.33
LINC00539-203ENST00000434601 SPZ1Q9BXG8 430 aa13.02□□□□□ -0.33
LINC00539-203ENST00000434601 ARHGEF10LQ9HCE6 1279 aa13.02□□□□□ -0.33
LINC00539-203ENST00000434601 SLC45A1Q9Y2W3 748 aa13.02□□□□□ -0.33
LINC00539-203ENST00000434601 ADGRA2Q96PE1 1338 aa13.02□□□□□ -0.33
LINC00539-203ENST00000434601 A0A0G2JLL6 359 aaPredicted RBP13.01□□□□□ -0.33
LINC00539-203ENST00000434601 DDX11L8A8MPP1 907 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 KLRF2D3W0D1 207 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 CTNND1O60716 968 aaKnown RBP13.01□□□□□ -0.33
LINC00539-203ENST00000434601 GOLGA8HP0CJ92 632 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 CAPN2P17655 700 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 OSBPP22059 807 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 SMARCA1P28370 1054 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 UBXN2AP68543 259 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 MOGSQ13724 837 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 PKN1Q16512 942 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 GPATCH4Q5T3I0 446 aaKnown RBP13.01□□□□□ -0.33
LINC00539-203ENST00000434601 KRT40Q6A162 431 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 PRRT2Q7Z6L0 340 aaPredicted RBP13.01□□□□□ -0.33
LINC00539-203ENST00000434601 FERMT3Q86UX7 667 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 GMCL1P1Q8NEA9 526 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 DCAF4Q8WV16 495 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 ZSCAN16Q9H4T2 348 aaPredicted RBP13.01□□□□□ -0.33
LINC00539-203ENST00000434601 SH2D4AQ9H788 454 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 ZHX2Q9Y6X8 837 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 FRMPD2Q68DX3 1309 aaPredicted RBP13.01□□□□□ -0.33
LINC00539-203ENST00000434601 MYPNQ86TC9 1320 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 PHIPQ8WWQ0 1821 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 DOCK3Q8IZD9 2030 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 TRIOBPQ9H2D6 2365 aa13.01□□□□□ -0.33
LINC00539-203ENST00000434601 GOLGA6L22H0YM25 854 aa13□□□□□ -0.33
LINC00539-203ENST00000434601 NDUFB10O96000 172 aa13□□□□□ -0.33
LINC00539-203ENST00000434601 BCRP11274 1271 aa13□□□□□ -0.33
LINC00539-203ENST00000434601 XBP1P17861 261 aa13□□□□□ -0.33
LINC00539-203ENST00000434601 PTPRAP18433 802 aa13□□□□□ -0.33
LINC00539-203ENST00000434601 SLC35G1Q2M3R5 365 aa13□□□□□ -0.33
LINC00539-203ENST00000434601 SLFN13Q68D06 897 aa13□□□□□ -0.33
LINC00539-203ENST00000434601 MCTP1Q6DN14 999 aa13□□□□□ -0.33
LINC00539-203ENST00000434601 SLAIN1Q8ND83 568 aa13□□□□□ -0.33
LINC00539-203ENST00000434601 GJB4Q9NTQ9 266 aa13□□□□□ -0.33
LINC00539-203ENST00000434601 BIN2Q9UBW5 565 aaPredicted RBP13□□□□□ -0.33
LINC00539-203ENST00000434601 AFG3L2Q9Y4W6 797 aa13□□□□□ -0.33
LINC00539-203ENST00000434601 V9GY48 417 aaPredicted RBP13□□□□□ -0.33
LINC00539-203ENST00000434601 hCG_1642624A0A1W2PR95 340 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 A0A1W2PRG0 241 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 F5H6K3 240 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 CYTH3O43739 400 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 ECM2O94769 699 aaPredicted RBP12.99□□□□□ -0.33
LINC00539-203ENST00000434601 GJB1P08034 283 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 SCG2P13521 617 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 CTGFP29279 349 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 SLC1A4P43007 532 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 GJA8P48165 433 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 KLRC3Q07444 240 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 PFKFB3Q16875 520 aaPredicted RBP12.99□□□□□ -0.33
LINC00539-203ENST00000434601 FOXD4L6Q3SYB3 417 aaPredicted RBP12.99□□□□□ -0.33
LINC00539-203ENST00000434601 GPAT2Q6NUI2 795 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 FOXD4L3Q6VB84 417 aaPredicted RBP12.99□□□□□ -0.33
LINC00539-203ENST00000434601 ACER1Q8TDN7 264 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 GMCL1Q96IK5 515 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 CHAMP1Q96JM3 812 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 HTATIP2Q9BUP3 242 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 RNF208Q9H0X6 261 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 GOPCQ9HD26 462 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 GPCPD1Q9NPB8 672 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.99□□□□□ -0.33
LINC00539-203ENST00000434601 TMX2Q9Y320 296 aa12.99□□□□□ -0.33
LINC00539-203ENST00000434601 RAD21O60216 631 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 MMP1P03956 469 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 CYP2C8P10632 490 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 PTMSP20962 102 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 NBR1Q14596 966 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 MTFR1Q15390 333 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 SAFBQ15424 915 aaKnown RBP eCLIP12.98□□□□□ -0.33
LINC00539-203ENST00000434601 GADL1Q6ZQY3 521 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 KCTD1Q719H9 257 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 BRAPQ7Z569 592 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 SMCR8Q8TEV9 937 aaPredicted RBP12.98□□□□□ -0.33
LINC00539-203ENST00000434601 PIBF1Q8WXW3 757 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 DPF3Q92784 378 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 RRP36Q96EU6 259 aaKnown RBP12.98□□□□□ -0.33
LINC00539-203ENST00000434601 CPVLQ9H3G5 476 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 RIOX1Q9H6W3 641 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 VCPKMTQ9H867 229 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 VPS54Q9P1Q0 977 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 SEC63Q9UGP8 760 aaKnown RBP12.98□□□□□ -0.33
LINC00539-203ENST00000434601 PNMA3Q9UL41 463 aa12.98□□□□□ -0.33
LINC00539-203ENST00000434601 ISY1Q9ULR0 285 aaKnown RBP12.98□□□□□ -0.33
LINC00539-203ENST00000434601 COLQQ9Y215 455 aaPredicted RBP12.98□□□□□ -0.33
LINC00539-203ENST00000434601 KIF28PB7ZC32 967 aa12.97□□□□□ -0.33
LINC00539-203ENST00000434601 BMP3P12645 472 aa12.97□□□□□ -0.33
LINC00539-203ENST00000434601 CCL5P13501 91 aa12.97□□□□□ -0.33
LINC00539-203ENST00000434601 FXR1P51114 621 aaKnown RBP eCLIP12.97□□□□□ -0.33
LINC00539-203ENST00000434601 KRT85P78386 507 aa12.97□□□□□ -0.33
LINC00539-203ENST00000434601 DNM1Q05193 864 aaKnown RBP12.97□□□□□ -0.33
LINC00539-203ENST00000434601 PRKCZQ05513 592 aa12.97□□□□□ -0.33
LINC00539-203ENST00000434601 CCDC84Q86UT8 332 aaPredicted RBP12.97□□□□□ -0.33
LINC00539-203ENST00000434601 HOMER1Q86YM7 354 aa12.97□□□□□ -0.33
LINC00539-203ENST00000434601 SHISA4Q96DD7 197 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms