RNA–Protein interactions for RNA: ENST00000428842.1

HMGCLL1-206, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 1 (best) BASIC

Gene HMGCLL1, Length 2,437 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-206ENST00000428842 RRP36Q96EU6 259 aaKnown RBP10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 GMCL1Q96IK5 515 aa10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 PAGR1Q9BTK6 254 aa10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 RNF26Q9BY78 433 aaPredicted RBP10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 TXNRD2Q9NNW7 524 aa10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 CIZ1Q9ULV3 898 aaPredicted RBP10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 PCDHA1Q9Y5I3 950 aa10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 NID2Q14112 1375 aa10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 ZNF157P51786 506 aaPredicted RBP10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 NLRP5P59047 1200 aa10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 KIF23Q02241 960 aaPredicted RBP10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 MUM1L1Q5H9M0 696 aa10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 ARMC9Q7Z3E5 817 aa10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 C2orf69Q8N8R5 385 aa10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 CWC22Q9HCG8 908 aaKnown RBP10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 CLIC4Q9Y696 253 aa10.97□□□□□ -0.65
HMGCLL1-206ENST00000428842 ZNF536O15090 1300 aa10.96□□□□□ -0.65
HMGCLL1-206ENST00000428842 SPDYE5A6NIY4 337 aa10.96□□□□□ -0.65
HMGCLL1-206ENST00000428842 NFIBO00712 420 aa10.96□□□□□ -0.65
HMGCLL1-206ENST00000428842 AOC2O75106 756 aa10.96□□□□□ -0.65
HMGCLL1-206ENST00000428842 CDKL5O76039 1030 aa10.96□□□□□ -0.65
HMGCLL1-206ENST00000428842 BAG4O95429 457 aaKnown RBP10.96□□□□□ -0.65
HMGCLL1-206ENST00000428842 MMP1P03956 469 aa10.96□□□□□ -0.65
HMGCLL1-206ENST00000428842 HMGN5P82970 282 aaKnown RBP10.96□□□□□ -0.65
HMGCLL1-206ENST00000428842 PIK3AP1Q6ZUJ8 805 aa10.96□□□□□ -0.65
HMGCLL1-206ENST00000428842 FAM43AQ8N2R8 423 aa10.96□□□□□ -0.65
HMGCLL1-206ENST00000428842 SPZ1Q9BXG8 430 aa10.96□□□□□ -0.65
HMGCLL1-206ENST00000428842 SEC63Q9UGP8 760 aaKnown RBP10.96□□□□□ -0.65
HMGCLL1-206ENST00000428842 DOCK3Q8IZD9 2030 aa10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 FSD2A1L4K1 749 aa10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 SMCO2A6NFE2 343 aa10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 ZBTB5O15062 677 aa10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 TOB1P50616 345 aaPredicted RBP10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 GNL2Q13823 731 aaKnown RBP10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 CCDC178Q5BJE1 867 aa10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 SPECC1Q5M775 1068 aa10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 FCHSD1Q86WN1 690 aa10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 ERO1BQ86YB8 467 aa10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 DCAF4Q8WV16 495 aa10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 BRI3BPQ8WY22 251 aa10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 USP28Q96RU2 1077 aa10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 PHF20Q9BVI0 1012 aa10.96□□□□□ -0.66
HMGCLL1-206ENST00000428842 PASKQ96RG2 1323 aa10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 RANBP2P49792 3224 aaKnown RBP10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 PRPF40AO75400 957 aaKnown RBP10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 ALAS1P13196 640 aa10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 MARCKSP29966 332 aaPredicted RBP10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 GRIN1Q05586 938 aa10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 TMEM132BQ14DG7 1078 aa10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 Q3C1V9 767 aa10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 GPATCH4Q5T3I0 446 aaKnown RBP10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 HOOK2Q96ED9 719 aa10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 MS4A4AQ96JQ5 239 aa10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 WDR18Q9BV38 432 aa10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 BARHL2Q9NY43 387 aa10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 BTBD7Q9P203 1132 aa10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 WDR33Q9C0J8 1336 aaKnown RBP10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 SPDYE16A6NNV3 312 aaPredicted RBP10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 CFBP00751 764 aa10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 NOL9Q5SY16 702 aaKnown RBP10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 PCDHB6Q9Y5E3 794 aa10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 PARP14Q460N5 1801 aa10.95□□□□□ -0.66
HMGCLL1-206ENST00000428842 CCL15-CCL14A0A0B4J2E2 113 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 PNMA6FA0A0J9YX94 578 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 DDX11L8A8MPP1 907 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 BTBD19C9JJ37 291 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 VWA5AO00534 786 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 TRIM29Q14134 588 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 CCL15Q16663 113 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 INF2Q27J81 1249 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 GPAT2Q6NUI2 795 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 SLF1Q9BQI6 1058 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 ASCC2Q9H1I8 757 aaPredicted RBP10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 TMOD4Q9NZQ9 345 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 TRPM7Q96QT4 1865 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 A0A0G2JLL6 359 aaPredicted RBP10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 IGF2BP3O00425 579 aaKnown RBP eCLIP10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 EDIL3O43854 480 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 TRAK2O60296 914 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 PTGS1P23219 599 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 PPATQ06203 517 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 MAP3K11Q16584 847 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 PRRT2Q7Z6L0 340 aaPredicted RBP10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 CYP2W1Q8TAV3 490 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 AS3MTQ9HBK9 375 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 COL20A1Q9P218 1284 aa10.94□□□□□ -0.66
HMGCLL1-206ENST00000428842 SORBS3O60504 671 aa10.93□□□□□ -0.66
HMGCLL1-206ENST00000428842 CDC25AP30304 524 aa10.93□□□□□ -0.66
HMGCLL1-206ENST00000428842 NUCB2P80303 420 aa10.93□□□□□ -0.66
HMGCLL1-206ENST00000428842 FSTL1Q12841 308 aa10.93□□□□□ -0.66
HMGCLL1-206ENST00000428842 ZNF174Q15697 407 aa10.93□□□□□ -0.66
HMGCLL1-206ENST00000428842 WDR78Q5VTH9 848 aa10.93□□□□□ -0.66
HMGCLL1-206ENST00000428842 SPRYD7Q5W111 196 aa10.93□□□□□ -0.66
HMGCLL1-206ENST00000428842 CATSPERGQ6ZRH7 1159 aa10.93□□□□□ -0.66
HMGCLL1-206ENST00000428842 FBXO11Q86XK2 927 aa10.93□□□□□ -0.66
HMGCLL1-206ENST00000428842 GZF1Q9H116 711 aaPredicted RBP10.93□□□□□ -0.66
HMGCLL1-206ENST00000428842 CCPG1Q9ULG6 757 aa10.93□□□□□ -0.66
HMGCLL1-206ENST00000428842 PPP1R9AQ9ULJ8 1098 aa10.93□□□□□ -0.66
HMGCLL1-206ENST00000428842 PCDHA6Q9UN73 950 aa10.93□□□□□ -0.66
HMGCLL1-206ENST00000428842 PCDHA8Q9Y5H6 950 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms