RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 ZNF215Q9UL58 517 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 NUB1Q9Y5A7 615 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 PCDHB7Q9Y5E2 793 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 CNTNAP5Q8WYK1 1306 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 NPC1L1Q9UHC9 1359 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 SBNO2Q9Y2G9 1366 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 LILRB3O75022 631 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 RASGRP1O95267 797 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 PARNO95453 639 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 CASTP20810 708 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 XPAP23025 273 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 KCNQ1P51787 676 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 RBPJQ06330 500 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 GRIN2CQ14957 1233 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 ARSJQ5FYB0 599 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 CFAP58Q5T655 872 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 SLC30A10Q6XR72 485 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 DSTYKQ6XUX3 929 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 NUDT8Q8WV74 236 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 FCRL3Q96P31 734 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 KATNAL1Q9BW62 490 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 MRS2Q9HD23 443 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 HOXC10Q9NYD6 342 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 SORCS3Q9UPU3 1222 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 SSX2IPQ9Y2D8 614 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 INPP5FQ9Y2H2 1132 aa3.19□□□□□ -1.9
CCDC88A-205ENST00000426576 MYO15BQ96JP2 1530 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ROCK2O75116 1388 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ERC2O15083 957 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 TLR2O60603 784 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 CA3P07451 260 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 SMPD1P17405 629 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 SPP2Q13103 211 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 MYBPHQ13203 477 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ANGPT1Q15389 498 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 PTPN14Q15678 1187 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 MFSD14BQ5SR56 506 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 SYNE3Q6ZMZ3 975 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ZNF444Q8N0Y2 327 aaPredicted RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 AGBL3Q8NEM8 1001 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 SSH3Q8TE77 659 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 RNF34Q969K3 372 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 RRP36Q96EU6 259 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 CASS4Q9NQ75 786 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 HMG20BQ9P0W2 317 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 DSEQ9UL01 958 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 POLQO75417 2590 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 SOS2Q07890 1332 aaPredicted RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ERICH2A1L162 156 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 EFCAB7A8K855 629 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 PSMD14O00487 310 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 PRPF6O94906 941 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 CXCL12P48061 93 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 DNM2P50570 870 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 CFAP100Q494V2 611 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 LARP1BQ659C4 914 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 POTEEQ6S8J3 1075 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 PDZD3Q86UT5 571 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 TXNRD3Q86VQ6 643 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ERC1Q8IUD2 1116 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 KREMEN2Q8NCW0 462 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 TSTD1Q8NFU3 115 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 MMP19Q99542 508 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 CYP26B1Q9NR63 512 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 CAMSAP2Q08AD1 1489 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ERBB4Q15303 1308 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 CENPJQ9HC77 1338 aaPredicted RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 CARMIL3Q8ND23 1372 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 PIK3R4Q99570 1358 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 PLA2R1Q13018 1463 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 MAN2B1O00754 1011 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 PRRG1O14668 218 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 CASKO14936 926 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 PPFIA2O75334 1257 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 SNRPB2P08579 225 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 XRCC6P12956 609 aaKnown RBP eCLIP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 RPL17P18621 184 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 TMOD1P28289 359 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 CIITAP33076 1130 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 SCNN1BP51168 640 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ATP8B2P98198 1209 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 NUCB1Q02818 461 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 RARS2Q5T160 578 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 FAM109BQ6ICB4 259 aaPredicted RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 RBMS3Q6XE24 437 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 EEPD1Q7L9B9 569 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ZNF467Q7Z7K2 595 aaPredicted RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 TTC6Q86TZ1 520 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 PPFIBP1Q86W92 1011 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 MCF2L2Q86YR7 1114 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 UCMAQ8WVF2 138 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 CASP10Q92851 521 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 TMEM121BQ9BXQ6 578 aaPredicted RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ARMT1Q9H993 441 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 LATS2Q9NRM7 1088 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 PNMA2Q9UL42 364 aa3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 SMG5Q9UPR3 1016 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 ARIH1Q9Y4X5 557 aaPredicted RBP3.18□□□□□ -1.9
CCDC88A-205ENST00000426576 CDHR2Q9BYE9 1310 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms