RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 MTMR8Q96EF0 704 aa19.67■□□□□ 0.74
CCDC28B-202ENST00000421922 SLC10A4Q96EP9 437 aa19.67■□□□□ 0.74
CCDC28B-202ENST00000421922 C12orf42Q96LP6 360 aa19.67■□□□□ 0.74
CCDC28B-202ENST00000421922 AMNQ9BXJ7 453 aa19.67■□□□□ 0.74
CCDC28B-202ENST00000421922 PCDHA4Q9UN74 947 aa19.67■□□□□ 0.74
CCDC28B-202ENST00000421922 BTBD18B2RXH4 712 aa19.66■□□□□ 0.74
CCDC28B-202ENST00000421922 KIF28PB7ZC32 967 aa19.66■□□□□ 0.74
CCDC28B-202ENST00000421922 FIBPO43427 364 aa19.66■□□□□ 0.74
CCDC28B-202ENST00000421922 U2AF2P26368 475 aaKnown RBP eCLIP19.66■□□□□ 0.74
CCDC28B-202ENST00000421922 ADCY7P51828 1080 aa19.66■□□□□ 0.74
CCDC28B-202ENST00000421922 PPIL2Q13356 520 aa19.66■□□□□ 0.74
CCDC28B-202ENST00000421922 FAM173BQ6P4H8 233 aa19.66■□□□□ 0.74
CCDC28B-202ENST00000421922 TNS4Q8IZW8 715 aa19.66■□□□□ 0.74
CCDC28B-202ENST00000421922 BLIDQ8IZY5 108 aa19.66■□□□□ 0.74
CCDC28B-202ENST00000421922 PRPF38AQ8NAV1 312 aaKnown RBP19.66■□□□□ 0.74
CCDC28B-202ENST00000421922 COA7Q96BR5 231 aa19.66■□□□□ 0.74
CCDC28B-202ENST00000421922 NOL7Q9UMY1 257 aaKnown RBP19.66■□□□□ 0.74
CCDC28B-202ENST00000421922 CNPY2Q9Y2B0 182 aa19.66■□□□□ 0.74
CCDC28B-202ENST00000421922 ESYT2A0FGR8 921 aa19.65■□□□□ 0.74
CCDC28B-202ENST00000421922 SMCO2A6NFE2 343 aa19.65■□□□□ 0.74
CCDC28B-202ENST00000421922 OPTNQ96CV9 577 aa19.65■□□□□ 0.74
CCDC28B-202ENST00000421922 SCAND2PQ9GZW5 306 aaPredicted RBP19.65■□□□□ 0.74
CCDC28B-202ENST00000421922 GLT8D2Q9H1C3 349 aa19.65■□□□□ 0.74
CCDC28B-202ENST00000421922 PCDHA1Q9Y5I3 950 aa19.65■□□□□ 0.74
CCDC28B-202ENST00000421922 CXCL11O14625 94 aa19.64■□□□□ 0.73
CCDC28B-202ENST00000421922 SNAP25P60880 206 aa19.64■□□□□ 0.73
CCDC28B-202ENST00000421922 FMR1Q06787 632 aaKnown RBP eCLIP19.64■□□□□ 0.73
CCDC28B-202ENST00000421922 DGKZQ13574 1117 aa19.64■□□□□ 0.73
CCDC28B-202ENST00000421922 SH3D19Q5HYK7 790 aa19.64■□□□□ 0.73
CCDC28B-202ENST00000421922 LDLRAD1Q5T700 205 aa19.64■□□□□ 0.73
CCDC28B-202ENST00000421922 MYSM1Q5VVJ2 828 aa19.64■□□□□ 0.73
CCDC28B-202ENST00000421922 CCDC174Q6PII3 467 aa19.64■□□□□ 0.73
CCDC28B-202ENST00000421922 GADL1Q6ZQY3 521 aa19.64■□□□□ 0.73
CCDC28B-202ENST00000421922 DAGLBQ8NCG7 672 aa19.64■□□□□ 0.73
CCDC28B-202ENST00000421922 FBXO28Q9NVF7 368 aa19.64■□□□□ 0.73
CCDC28B-202ENST00000421922 LOC285556D6RIA3 1793 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 CCDC194A0A1B0GVG4 234 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 USP17L15C9J2P7 530 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 USP17L13C9JLJ4 530 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 USP17L11C9JVI0 530 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 USP17L18D6R9N7 530 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 USP17L22D6RA61 530 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 USP17L17D6RBQ6 530 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 USP17L19D6RCP7 530 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 USP17L20D6RJB6 530 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 ZBED4O75132 1171 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 FDX1P10109 184 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 USP17L24Q0WX57 530 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 NR5A1Q13285 461 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 NBR1Q14596 966 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 USH1GQ495M9 461 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 OXER1Q8TDS5 423 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 CNKSR2Q8WXI2 1034 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 CUL5Q93034 780 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 CHAMP1Q96JM3 812 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 SPATA32Q96LK8 384 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 ZMYND12Q9H0C1 365 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 RANBP17Q9H2T7 1088 aaKnown RBP19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 PPP1R9AQ9ULJ8 1098 aa19.63■□□□□ 0.73
CCDC28B-202ENST00000421922 IRF6O14896 467 aa19.62■□□□□ 0.73
CCDC28B-202ENST00000421922 MRPL12P52815 198 aaKnown RBP19.62■□□□□ 0.73
CCDC28B-202ENST00000421922 PARP14Q460N5 1801 aa19.62■□□□□ 0.73
CCDC28B-202ENST00000421922 TYW1BQ6NUM6 668 aa19.62■□□□□ 0.73
CCDC28B-202ENST00000421922 REXO1Q8N1G1 1221 aaKnown RBP19.62■□□□□ 0.73
CCDC28B-202ENST00000421922 PROCA1Q8NCQ7 364 aaPredicted RBP19.62■□□□□ 0.73
CCDC28B-202ENST00000421922 SHISA4Q96DD7 197 aa19.62■□□□□ 0.73
CCDC28B-202ENST00000421922 TFIP11Q9UBB9 837 aaKnown RBP19.62■□□□□ 0.73
CCDC28B-202ENST00000421922 PNMA2Q9UL42 364 aa19.62■□□□□ 0.73
CCDC28B-202ENST00000421922 PPP1R11O60927 126 aaPredicted RBP19.61■□□□□ 0.73
CCDC28B-202ENST00000421922 CEBPZQ03701 1054 aaKnown RBP19.61■□□□□ 0.73
CCDC28B-202ENST00000421922 STK38Q15208 465 aa19.61■□□□□ 0.73
CCDC28B-202ENST00000421922 RILPL1Q5EBL4 403 aa19.61■□□□□ 0.73
CCDC28B-202ENST00000421922 SMC1BQ8NDV3 1235 aa19.61■□□□□ 0.73
CCDC28B-202ENST00000421922 GDPD2Q9HCC8 539 aa19.61■□□□□ 0.73
CCDC28B-202ENST00000421922 A0A0G2JLL6 359 aaPredicted RBP19.6■□□□□ 0.73
CCDC28B-202ENST00000421922 GOLGA6L4A6NEF3 574 aa19.6■□□□□ 0.73
CCDC28B-202ENST00000421922 PRPF40AO75400 957 aaKnown RBP19.6■□□□□ 0.73
CCDC28B-202ENST00000421922 PABPC4Q13310 644 aaKnown RBP eCLIP19.6■□□□□ 0.732e-6■■■■□ 22.3
CCDC28B-202ENST00000421922 SNAPC2Q13487 334 aa19.6■□□□□ 0.73
CCDC28B-202ENST00000421922 SF3A1Q15459 793 aaKnown RBP19.6■□□□□ 0.73
CCDC28B-202ENST00000421922 PIK3AP1Q6ZUJ8 805 aa19.6■□□□□ 0.73
CCDC28B-202ENST00000421922 FASTKD5Q7L8L6 764 aaKnown RBP19.6■□□□□ 0.73
CCDC28B-202ENST00000421922 KRT25Q7Z3Z0 450 aa19.6■□□□□ 0.73
CCDC28B-202ENST00000421922 PRRT2Q7Z6L0 340 aaPredicted RBP19.6■□□□□ 0.73
CCDC28B-202ENST00000421922 PSTPIP2Q9H939 334 aa19.6■□□□□ 0.73
CCDC28B-202ENST00000421922 RIC8AQ9NPQ8 531 aa19.6■□□□□ 0.73
CCDC28B-202ENST00000421922 KCNH4Q9UQ05 1017 aa19.6■□□□□ 0.73
CCDC28B-202ENST00000421922 ABCB11O95342 1321 aa19.6■□□□□ 0.73
CCDC28B-202ENST00000421922 IRX3P78415 501 aaPredicted RBP19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 COG2Q14746 738 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 CATSPERGQ6ZRH7 1159 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 CCPG1Q9ULG6 757 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 CEP131Q9UPN4 1083 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 MRPL11Q9Y3B7 192 aaKnown RBP19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 MYPNQ86TC9 1320 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 ITGBL1O95965 494 aaPredicted RBP19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 ICAM1P05362 532 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 ATP2B1P20020 1258 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 NPY5RQ15761 445 aa19.59■□□□□ 0.73
CCDC28B-202ENST00000421922 ANO1Q5XXA6 986 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms