RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SYNGAP1Q96PV0 1343 aa15.42■□□□□ 0.06
LINC00339-202ENST00000416769 LCTP09848 1927 aa15.41■□□□□ 0.06
LINC00339-202ENST00000416769 MUC3AQ02505 3323 aa15.41■□□□□ 0.06
LINC00339-202ENST00000416769 TIMP1P01033 207 aa15.41■□□□□ 0.06
LINC00339-202ENST00000416769 ASGR1P07306 291 aa15.41■□□□□ 0.06
LINC00339-202ENST00000416769 CSF2RAP15509 400 aa15.41■□□□□ 0.06
LINC00339-202ENST00000416769 ACVR2BQ13705 512 aa15.41■□□□□ 0.06
LINC00339-202ENST00000416769 CCDC144BQ3MJ40 725 aa15.41■□□□□ 0.06
LINC00339-202ENST00000416769 ARMCX2Q7L311 632 aa15.41■□□□□ 0.06
LINC00339-202ENST00000416769 DDRGK1Q96HY6 314 aa15.41■□□□□ 0.06
LINC00339-202ENST00000416769 TSEN34Q9BSV6 310 aaKnown RBP15.41■□□□□ 0.06
LINC00339-202ENST00000416769 LRRCC1Q9C099 1032 aa15.41■□□□□ 0.06
LINC00339-202ENST00000416769 MKNK2Q9HBH9 465 aa15.41■□□□□ 0.06
LINC00339-202ENST00000416769 SLC38A10Q9HBR0 1119 aa15.41■□□□□ 0.06
LINC00339-202ENST00000416769 CHD9Q3L8U1 2897 aa15.4■□□□□ 0.06
LINC00339-202ENST00000416769 DCDC2CA8MYV0 355 aa15.4■□□□□ 0.06
LINC00339-202ENST00000416769 GPAA1O43292 621 aa15.4■□□□□ 0.06
LINC00339-202ENST00000416769 DUSP11O75319 330 aaKnown RBP15.4■□□□□ 0.06
LINC00339-202ENST00000416769 CDK7P50613 346 aa15.4■□□□□ 0.06
LINC00339-202ENST00000416769 TMEM240Q5SV17 173 aa15.4■□□□□ 0.06
LINC00339-202ENST00000416769 CCDC144CPQ8IYA2 1237 aa15.4■□□□□ 0.06
LINC00339-202ENST00000416769 OTUD7AQ8TE49 926 aaPredicted RBP15.4■□□□□ 0.06
LINC00339-202ENST00000416769 PPM1EQ8WY54 764 aa15.4■□□□□ 0.06
LINC00339-202ENST00000416769 TIFAQ96CG3 184 aa15.4■□□□□ 0.06
LINC00339-202ENST00000416769 TOX2Q96NM4 488 aa15.4■□□□□ 0.06
LINC00339-202ENST00000416769 PURBQ96QR8 312 aaKnown RBP15.4■□□□□ 0.06
LINC00339-202ENST00000416769 PBX4Q9BYU1 374 aa15.4■□□□□ 0.06
LINC00339-202ENST00000416769 UPF3AQ9H1J1 476 aaKnown RBP15.4■□□□□ 0.06
LINC00339-202ENST00000416769 ZNF576Q9H609 170 aa15.4■□□□□ 0.06
LINC00339-202ENST00000416769 INCENPQ9NQS7 918 aa15.4■□□□□ 0.06
LINC00339-202ENST00000416769 ECHDC1Q9NTX5 307 aa15.4■□□□□ 0.06
LINC00339-202ENST00000416769 CXXC1Q9P0U4 656 aaPredicted RBP15.4■□□□□ 0.06
LINC00339-202ENST00000416769 MOXD2PA6NHM9 499 aa15.39■□□□□ 0.05
LINC00339-202ENST00000416769 ATP2A1O14983 1001 aa15.39■□□□□ 0.05
LINC00339-202ENST00000416769 CYP2C18P33260 490 aa15.39■□□□□ 0.05
LINC00339-202ENST00000416769 COPB2P35606 906 aa15.39■□□□□ 0.05
LINC00339-202ENST00000416769 FAM126BQ8IXS8 530 aa15.39■□□□□ 0.05
LINC00339-202ENST00000416769 ANKRD35Q8N283 1001 aa15.39■□□□□ 0.05
LINC00339-202ENST00000416769 KBTBD3Q8NAB2 608 aa15.39■□□□□ 0.05
LINC00339-202ENST00000416769 PRPF38AQ8NAV1 312 aaKnown RBP15.39■□□□□ 0.05
LINC00339-202ENST00000416769 APPBP2Q92624 585 aa15.39■□□□□ 0.05
LINC00339-202ENST00000416769 AGBL1Q96MI9 1066 aa15.39■□□□□ 0.05
LINC00339-202ENST00000416769 PRDM12Q9H4Q4 367 aa15.39■□□□□ 0.05
LINC00339-202ENST00000416769 MTMR4Q9NYA4 1195 aa15.39■□□□□ 0.05
LINC00339-202ENST00000416769 ZNF536O15090 1300 aa15.39■□□□□ 0.05
LINC00339-202ENST00000416769 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.38■□□□□ 0.05
LINC00339-202ENST00000416769 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.38■□□□□ 0.05
LINC00339-202ENST00000416769 SOWAHBA6NEL2 793 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 RNF113AO15541 343 aaKnown RBP15.38■□□□□ 0.05
LINC00339-202ENST00000416769 ZBED4O75132 1171 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 CST5P28325 142 aaPredicted RBP15.38■□□□□ 0.05
LINC00339-202ENST00000416769 TDO2P48775 406 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 ADGRE1Q14246 886 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 GNASQ5JWF2 1037 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 RASIP1Q5U651 963 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 MFSD5Q6N075 450 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 ZSCAN25Q6NSZ9 544 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 CXCL17Q6UXB2 119 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 ZNF365Q70YC5 407 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 NUP133Q8WUM0 1156 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 VTI1AQ96AJ9 217 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 GLT1D1Q96MS3 346 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 PDGFCQ9NRA1 345 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 ISY1Q9ULR0 285 aaKnown RBP15.38■□□□□ 0.05
LINC00339-202ENST00000416769 PCDHB15Q9Y5E8 787 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 CHD7Q9P2D1 2997 aa15.38■□□□□ 0.05
LINC00339-202ENST00000416769 ARVCFO00192 962 aa15.37■□□□□ 0.05
LINC00339-202ENST00000416769 FOXP2O15409 715 aa15.37■□□□□ 0.05
LINC00339-202ENST00000416769 NMT2O60551 498 aa15.37■□□□□ 0.05
LINC00339-202ENST00000416769 APPP05067 770 aa15.37■□□□□ 0.05
LINC00339-202ENST00000416769 GJA9P57773 515 aa15.37■□□□□ 0.05
LINC00339-202ENST00000416769 SLFN13Q68D06 897 aa15.37■□□□□ 0.05
LINC00339-202ENST00000416769 ZNF467Q7Z7K2 595 aaPredicted RBP15.37■□□□□ 0.05
LINC00339-202ENST00000416769 MSL3Q8N5Y2 521 aaKnown RBP15.37■□□□□ 0.05
LINC00339-202ENST00000416769 FAM133AQ8N9E0 248 aa15.37■□□□□ 0.05
LINC00339-202ENST00000416769 A1CFQ9NQ94 594 aaKnown RBP15.37■□□□□ 0.05
LINC00339-202ENST00000416769 RNF216Q9NWF9 866 aaPredicted RBP15.37■□□□□ 0.05
LINC00339-202ENST00000416769 RAPGEFL1Q9UHV5 662 aa15.37■□□□□ 0.05
LINC00339-202ENST00000416769 GRIN2DO15399 1336 aa15.37■□□□□ 0.05
LINC00339-202ENST00000416769 ELP1O95163 1332 aa15.37■□□□□ 0.05
LINC00339-202ENST00000416769 TMEM265A0A087WTH1 108 aa15.36■□□□□ 0.05
LINC00339-202ENST00000416769 A0A0U1RQG5 324 aaPredicted RBP15.36■□□□□ 0.05
LINC00339-202ENST00000416769 TMEM232C9JQI7 657 aa15.36■□□□□ 0.05
LINC00339-202ENST00000416769 PSMC6P62333 389 aa15.36■□□□□ 0.05
LINC00339-202ENST00000416769 MUM1L1Q5H9M0 696 aa15.36■□□□□ 0.05
LINC00339-202ENST00000416769 CCDC129Q6ZRS4 1044 aa15.36■□□□□ 0.05
LINC00339-202ENST00000416769 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.36■□□□□ 0.05
LINC00339-202ENST00000416769 EEPD1Q7L9B9 569 aa15.36■□□□□ 0.05
LINC00339-202ENST00000416769 IFNL3Q8IZI9 196 aa15.36■□□□□ 0.05
LINC00339-202ENST00000416769 PPP1R13LQ8WUF5 828 aa15.36■□□□□ 0.05
LINC00339-202ENST00000416769 MKL1Q969V6 931 aa15.36■□□□□ 0.05
LINC00339-202ENST00000416769 VWCEQ96DN2 955 aa15.36■□□□□ 0.05
LINC00339-202ENST00000416769 ABHD16BQ9H3Z7 469 aa15.36■□□□□ 0.05
LINC00339-202ENST00000416769 RNF146Q9NTX7 359 aa15.36■□□□□ 0.05
LINC00339-202ENST00000416769 FEM1BQ9UK73 627 aa15.36■□□□□ 0.05
LINC00339-202ENST00000416769 YBX2Q9Y2T7 364 aaKnown RBP15.36■□□□□ 0.05
LINC00339-202ENST00000416769 NCOR1O75376 2440 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 TTLL1O95922 423 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 CD4P01730 458 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 BMP3P12645 472 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms