RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 SLC10A3P09131 477 aa16.43■□□□□ 0.22
SF3B1-204ENST00000414963 ZSCAN22P10073 491 aaPredicted RBP16.43■□□□□ 0.22
SF3B1-204ENST00000414963 GALNT17Q6IS24 598 aa16.43■□□□□ 0.22
SF3B1-204ENST00000414963 LBX2Q6XYB7 198 aa16.43■□□□□ 0.22
SF3B1-204ENST00000414963 HEATR3Q7Z4Q2 680 aa16.43■□□□□ 0.22
SF3B1-204ENST00000414963 FBXO11Q86XK2 927 aa16.43■□□□□ 0.22
SF3B1-204ENST00000414963 TEX2Q8IWB9 1127 aa16.43■□□□□ 0.22
SF3B1-204ENST00000414963 CCDC12Q8WUD4 166 aaPredicted RBP16.43■□□□□ 0.22
SF3B1-204ENST00000414963 PHF20Q9BVI0 1012 aa16.43■□□□□ 0.22
SF3B1-204ENST00000414963 AMNQ9BXJ7 453 aa16.43■□□□□ 0.22
SF3B1-204ENST00000414963 GJB4Q9NTQ9 266 aa16.43■□□□□ 0.22
SF3B1-204ENST00000414963 VPS54Q9P1Q0 977 aa16.43■□□□□ 0.22
SF3B1-204ENST00000414963 ESYT2A0FGR8 921 aa16.42■□□□□ 0.22
SF3B1-204ENST00000414963 FAM155AB1AL88 458 aaPredicted RBP16.42■□□□□ 0.22
SF3B1-204ENST00000414963 ZBED4O75132 1171 aa16.42■□□□□ 0.22
SF3B1-204ENST00000414963 MMP1P03956 469 aa16.42■□□□□ 0.22
SF3B1-204ENST00000414963 CALML3P27482 149 aa16.42■□□□□ 0.22
SF3B1-204ENST00000414963 OAZ1P54368 228 aa16.42■□□□□ 0.22
SF3B1-204ENST00000414963 TYW1BQ6NUM6 668 aa16.42■□□□□ 0.22
SF3B1-204ENST00000414963 ANKRD23Q86SG2 305 aa16.42■□□□□ 0.22
SF3B1-204ENST00000414963 REPS2Q8NFH8 660 aa16.42■□□□□ 0.22
SF3B1-204ENST00000414963 CCDC148Q8NFR7 591 aa16.42■□□□□ 0.22
SF3B1-204ENST00000414963 BRI3BPQ8WY22 251 aa16.42■□□□□ 0.22
SF3B1-204ENST00000414963 GPKOWQ92917 476 aaPredicted RBP eCLIP16.42■□□□□ 0.223e-8■■■□□ 18.6
SF3B1-204ENST00000414963 ZMYND12Q9H0C1 365 aa16.42■□□□□ 0.22
SF3B1-204ENST00000414963 CREBZFQ9NS37 354 aa16.42■□□□□ 0.22
SF3B1-204ENST00000414963 ABT1Q9ULW3 272 aaKnown RBP16.42■□□□□ 0.22
SF3B1-204ENST00000414963 BAZ2BQ9UIF8 2168 aaKnown RBP16.42■□□□□ 0.22
SF3B1-204ENST00000414963 CCL15-CCL14A0A0B4J2E2 113 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 VPS37CA5D8V6 355 aaPredicted RBP16.41■□□□□ 0.22
SF3B1-204ENST00000414963 MANSC4A6NHS7 340 aaPredicted RBP16.41■□□□□ 0.22
SF3B1-204ENST00000414963 ATP2A1O14983 1001 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 ICAM1P05362 532 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 OSBPP22059 807 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 APLP1P51693 650 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 INHBEP58166 350 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 NPY5RQ15761 445 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 CCL15Q16663 113 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 OTUD7BQ6GQQ9 843 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 MB21D1Q8N884 522 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 DAGLBQ8NCG7 672 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 ATG4CQ96DT6 458 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 ASCC2Q9H1I8 757 aaPredicted RBP16.41■□□□□ 0.22
SF3B1-204ENST00000414963 KCNJ14Q9UNX9 436 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 PCDHA1Q9Y5I3 950 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 ZNF536O15090 1300 aa16.41■□□□□ 0.22
SF3B1-204ENST00000414963 SPDYE16A6NNV3 312 aaPredicted RBP16.4■□□□□ 0.22
SF3B1-204ENST00000414963 U2AF2P26368 475 aaKnown RBP eCLIP16.4■□□□□ 0.225e-9■■■□□ 19.2
SF3B1-204ENST00000414963 NAPAP54920 295 aa16.4■□□□□ 0.22
SF3B1-204ENST00000414963 SNAP25P60880 206 aa16.4■□□□□ 0.22
SF3B1-204ENST00000414963 GUCY1B3Q02153 619 aa16.4■□□□□ 0.22
SF3B1-204ENST00000414963 SAFBQ15424 915 aaKnown RBP eCLIP16.4■□□□□ 0.22
SF3B1-204ENST00000414963 P2RX7Q99572 595 aaKnown RBP16.4■□□□□ 0.22
SF3B1-204ENST00000414963 FOXP1Q9H334 677 aaPredicted RBP16.4■□□□□ 0.22
SF3B1-204ENST00000414963 ZSCAN16Q9H4T2 348 aaPredicted RBP16.4■□□□□ 0.22
SF3B1-204ENST00000414963 ZCCHC17Q9NP64 241 aaKnown RBP16.4■□□□□ 0.22
SF3B1-204ENST00000414963 RLFQ13129 1914 aa16.4■□□□□ 0.22
SF3B1-204ENST00000414963 RASSF10A6NK89 507 aa16.39■□□□□ 0.21
SF3B1-204ENST00000414963 BTBD19C9JJ37 291 aa16.39■□□□□ 0.21
SF3B1-204ENST00000414963 F13A1P00488 732 aa16.39■□□□□ 0.21
SF3B1-204ENST00000414963 GNA11P29992 359 aa16.39■□□□□ 0.21
SF3B1-204ENST00000414963 FOSBP53539 338 aa16.39■□□□□ 0.21
SF3B1-204ENST00000414963 NLRP5P59047 1200 aa16.39■□□□□ 0.21
SF3B1-204ENST00000414963 IRX3P78415 501 aaPredicted RBP16.39■□□□□ 0.21
SF3B1-204ENST00000414963 KIF23Q02241 960 aaPredicted RBP16.39■□□□□ 0.21
SF3B1-204ENST00000414963 RESTQ13127 1097 aa16.39■□□□□ 0.21
SF3B1-204ENST00000414963 COA7Q96BR5 231 aa16.39■□□□□ 0.21
SF3B1-204ENST00000414963 PTPN18Q99952 460 aa16.39■□□□□ 0.21
SF3B1-204ENST00000414963 GLT8D2Q9H1C3 349 aa16.39■□□□□ 0.21
SF3B1-204ENST00000414963 C6orf50Q9HD87 102 aa16.39■□□□□ 0.21
SF3B1-204ENST00000414963 PNMA3Q9UL41 463 aa16.39■□□□□ 0.21
SF3B1-204ENST00000414963 PCDHA4Q9UN74 947 aa16.39■□□□□ 0.21
SF3B1-204ENST00000414963 SMCO2A6NFE2 343 aa16.38■□□□□ 0.21
SF3B1-204ENST00000414963 M0R2N6 131 aa16.38■□□□□ 0.21
SF3B1-204ENST00000414963 HERVK_113P62684 666 aa16.38■□□□□ 0.21
SF3B1-204ENST00000414963 MKRN3Q13064 507 aaKnown RBP16.38■□□□□ 0.21
SF3B1-204ENST00000414963 CCDC174Q6PII3 467 aa16.38■□□□□ 0.21
SF3B1-204ENST00000414963 POTEEQ6S8J3 1075 aa16.38■□□□□ 0.21
SF3B1-204ENST00000414963 DIS3L2Q8IYB7 885 aaKnown RBP16.38■□□□□ 0.21
SF3B1-204ENST00000414963 BICD2Q8TD16 824 aa16.38■□□□□ 0.21
SF3B1-204ENST00000414963 GTF3C2Q8WUA4 911 aaPredicted RBP16.38■□□□□ 0.21
SF3B1-204ENST00000414963 MAF1Q9H063 256 aa16.38■□□□□ 0.21
SF3B1-204ENST00000414963 BRMS1Q9HCU9 246 aa16.38■□□□□ 0.21
SF3B1-204ENST00000414963 RIC8AQ9NPQ8 531 aa16.38■□□□□ 0.21
SF3B1-204ENST00000414963 ZNF214Q9UL59 606 aaPredicted RBP16.38■□□□□ 0.21
SF3B1-204ENST00000414963 MRPL11Q9Y3B7 192 aaKnown RBP16.38■□□□□ 0.21
SF3B1-204ENST00000414963 ABCB11O95342 1321 aa16.38■□□□□ 0.21
SF3B1-204ENST00000414963 MYH6P13533 1939 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 BTBD18B2RXH4 712 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 PDHXO00330 501 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 KRT2P35908 639 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 MRPL12P52815 198 aaKnown RBP16.37■□□□□ 0.21
SF3B1-204ENST00000414963 TMEM132BQ14DG7 1078 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 CLEC17AQ6ZS10 378 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 BRAPQ7Z569 592 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 BLIDQ8IZY5 108 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 TNFRSF25Q93038 417 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 AGBL1Q96MI9 1066 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 PSTPIP2Q9H939 334 aa16.37■□□□□ 0.21
SF3B1-204ENST00000414963 RAVER2Q9HCJ3 691 aaKnown RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms