RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 PTCH1Q13635 1447 aa19.08■□□□□ 0.65
PHRF1-202ENST00000413872 GLI2P10070 1586 aa19.08■□□□□ 0.65
PHRF1-202ENST00000413872 POLGP54098 1239 aaPredicted RBP19.08■□□□□ 0.65
PHRF1-202ENST00000413872 SCRN1Q12765 414 aa19.08■□□□□ 0.65
PHRF1-202ENST00000413872 PTGDRQ13258 359 aa19.08■□□□□ 0.65
PHRF1-202ENST00000413872 KRBA2Q6ZNG9 492 aa19.08■□□□□ 0.65
PHRF1-202ENST00000413872 ANKS4BQ8N8V4 417 aa19.08■□□□□ 0.65
PHRF1-202ENST00000413872 UIMC1Q96RL1 719 aa19.08■□□□□ 0.65
PHRF1-202ENST00000413872 STIM2Q9P246 746 aa19.08■□□□□ 0.65
PHRF1-202ENST00000413872 GADD45BO75293 160 aaPredicted RBP19.08■□□□□ 0.64
PHRF1-202ENST00000413872 RAD17O75943 681 aa19.08■□□□□ 0.64
PHRF1-202ENST00000413872 C8orf74Q6P047 294 aa19.08■□□□□ 0.64
PHRF1-202ENST00000413872 LCORLQ8N3X6 602 aa19.08■□□□□ 0.64
PHRF1-202ENST00000413872 RTEL1Q9NZ71 1219 aa19.08■□□□□ 0.64
PHRF1-202ENST00000413872 COL15A1P39059 1388 aa19.08■□□□□ 0.64
PHRF1-202ENST00000413872 HOXA7P31268 230 aaPredicted RBP19.08■□□□□ 0.64
PHRF1-202ENST00000413872 FBF1Q8TES7 1133 aa19.08■□□□□ 0.64
PHRF1-202ENST00000413872 CARMIL3Q8ND23 1372 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 IVLP07476 585 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 LRCH2Q5VUJ6 765 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 GTF2F1P35269 517 aaKnown RBP eCLIP19.07■□□□□ 0.64
PHRF1-202ENST00000413872 STAT2P52630 851 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 PPP2R3AQ06190 1150 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 ANTXR1Q9H6X2 564 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 RHOXF2BP0C7M4 288 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 CNGA1P29973 690 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 CYP2J2P51589 502 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 SPOUT1Q5T280 376 aaKnown RBP19.07■□□□□ 0.64
PHRF1-202ENST00000413872 GBP6Q6ZN66 633 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 RHOXF2Q9BQY4 288 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 C1orf112Q9NSG2 853 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 JCADQ9P266 1359 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 PPP6R2O75170 966 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 RASGRF1Q13972 1273 aa19.07■□□□□ 0.64
PHRF1-202ENST00000413872 UTP11Q9Y3A2 253 aaKnown RBP19.07■□□□□ 0.64
PHRF1-202ENST00000413872 XPOTO43592 962 aaKnown RBP19.06■□□□□ 0.64
PHRF1-202ENST00000413872 LIFRP42702 1097 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 BRIP1Q9BX63 1249 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 FEZ2Q9UHY8 353 aaPredicted RBP19.06■□□□□ 0.64
PHRF1-202ENST00000413872 CRB1P82279 1406 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 RSPH3Q86UC2 560 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 ATRIPQ8WXE1 791 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 SELENOSQ9BQE4 189 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 RIOK1Q9BRS2 568 aaKnown RBP19.06■□□□□ 0.64
PHRF1-202ENST00000413872 CD2APQ9Y5K6 639 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 KCNJ18B7U540 433 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 ZBTB16Q05516 673 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 KCNJ12Q14500 433 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 IFNAR1P17181 557 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 MECOMQ03112 1051 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 MORC3Q14149 939 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 ERO1AQ96HE7 468 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 NBPF3Q9H094 633 aa19.06■□□□□ 0.64
PHRF1-202ENST00000413872 ATF5Q9Y2D1 282 aaPredicted RBP19.06■□□□□ 0.64
PHRF1-202ENST00000413872 SPHKAPQ2M3C7 1700 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 TLDC2A0PJX2 215 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 GAP43P17677 238 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 MTX1Q13505 466 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 RRAGAQ7L523 313 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 PODNQ7Z5L7 613 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 OR8K1Q8NGG5 319 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 ARMCX5Q6P1M9 558 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 TRMT44Q8IYL2 757 aaKnown RBP19.05■□□□□ 0.64
PHRF1-202ENST00000413872 SMC6Q96SB8 1091 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 AP5M1Q9H0R1 490 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 SUGCTQ9HAC7 445 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 SLC39A14Q15043 492 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 SYDE2Q5VT97 1194 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 SPICE1Q8N0Z3 855 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 RDH13Q8NBN7 331 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 OSBP2Q969R2 916 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 FAM207AQ9NSI2 230 aaPredicted RBP19.05■□□□□ 0.64
PHRF1-202ENST00000413872 ABCA9Q8IUA7 1624 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 PCDHA7Q9UN72 937 aa19.05■□□□□ 0.64
PHRF1-202ENST00000413872 USP17L8P0C7I0 530 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 RPS6KA1Q15418 735 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 ARHGAP44Q17R89 818 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 HDXQ7Z353 690 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 ZNF589Q86UQ0 364 aaPredicted RBP19.04■□□□□ 0.64
PHRF1-202ENST00000413872 CCDC94Q9BW85 323 aaPredicted RBP19.04■□□□□ 0.64
PHRF1-202ENST00000413872 LSM14BQ9BX40 385 aaKnown RBP19.04■□□□□ 0.64
PHRF1-202ENST00000413872 SASH1O94885 1247 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 RPN1P04843 607 aaKnown RBP19.04■□□□□ 0.64
PHRF1-202ENST00000413872 MXRA7P84157 204 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 UTP14CQ5TAP6 766 aaKnown RBP19.04■□□□□ 0.64
PHRF1-202ENST00000413872 DGKHQ86XP1 1220 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 RASEFQ8IZ41 740 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 ZNF577Q9BSK1 485 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 NKIRAS1Q9NYS0 192 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 SH2B2O14492 632 aaPredicted RBP19.04■□□□□ 0.64
PHRF1-202ENST00000413872 ASNSP08243 561 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 IFT20Q8IY31 132 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 SLC7A3Q8WY07 619 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 GSDMAQ96QA5 445 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 PUS7LQ9H0K6 701 aaKnown RBP19.04■□□□□ 0.64
PHRF1-202ENST00000413872 GDF11O95390 407 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 TMEM179Q6ZVK1 233 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 PEX26Q7Z412 305 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 RETREG2Q8NC44 543 aa19.04■□□□□ 0.64
PHRF1-202ENST00000413872 AXIN2Q9Y2T1 843 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms