RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 USP17L24Q0WX57 530 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 AP3B2Q13367 1082 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 ANKRD13AQ8IZ07 590 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 IDI2Q9BXS1 227 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 KLRG2A4D1S0 409 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-211ENST00000413186 POTEB2H3BUK9 544 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 CHGBP05060 677 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 XRCC6P12956 609 aaKnown RBP eCLIP9.56□□□□□ -0.88
SYNE1-211ENST00000413186 SP4Q02446 784 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 PFKFB3Q16875 520 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-211ENST00000413186 SPDYE2Q495Y8 402 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 CCDC40Q4G0X9 1142 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 ADALQ6DHV7 355 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 NCAPH2Q6IBW4 605 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 HS2ST1Q7LGA3 356 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 FAM200AQ8TCP9 573 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 TMEM39BQ9GZU3 492 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 PDCL3Q9H2J4 239 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 PCDHA12Q9UN75 941 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 DNM3Q9UQ16 869 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 A0A1B0GVL5 298 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 CCDC66A2RUB6 948 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 DPP9Q86TI2 863 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 PLA2G4DQ86XP0 818 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 ZNF280CQ8ND82 737 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 SPZ1Q9BXG8 430 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 GAKO14976 1311 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 ABCB11O95342 1321 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 TESPA1A2RU30 521 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-211ENST00000413186 ARHGEF35A5YM69 484 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 NMT2O60551 498 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 PLEKHA8P1O95397 391 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 MTIF2P46199 727 aaKnown RBP9.56□□□□□ -0.88
SYNE1-211ENST00000413186 ZNF397Q8NF99 534 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-211ENST00000413186 BICD1Q96G01 975 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 OTUD5Q96G74 571 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 TRIM47Q96LD4 638 aa9.56□□□□□ -0.88
SYNE1-211ENST00000413186 CHMP2AO43633 222 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 CD2BP2O95400 341 aaKnown RBP9.55□□□□□ -0.88
SYNE1-211ENST00000413186 KIF23Q02241 960 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-211ENST00000413186 PRR16Q569H4 304 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 CT47A1Q5JQC4 288 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-211ENST00000413186 CCDC150Q8NCX0 1101 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 IGDCC4Q8TDY8 1250 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 KCNB2Q92953 911 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 SYT17Q9BSW7 474 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.55□□□□□ -0.88
SYNE1-211ENST00000413186 DDX25Q9UHL0 483 aaKnown RBP9.55□□□□□ -0.88
SYNE1-211ENST00000413186 BICDL2A1A5D9 508 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 CABP7Q86V35 215 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 GTF3C2Q8WUA4 911 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-211ENST00000413186 COA7Q96BR5 231 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 USP28Q96RU2 1077 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 VCPKMTQ9H867 229 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 RTEL1Q9NZ71 1219 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 AFDNP55196 1824 aaKnown RBP9.55□□□□□ -0.88
SYNE1-211ENST00000413186 XIRP1Q702N8 1843 aaKnown RBP9.55□□□□□ -0.88
SYNE1-211ENST00000413186 LARGE1O95461 756 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 SMARCA1P28370 1054 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 NFIAQ12857 509 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 TEKT3Q9BXF9 490 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 DDNO94850 711 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-211ENST00000413186 LIG1P18858 919 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 LONP1P36776 959 aaKnown RBP9.55□□□□□ -0.88
SYNE1-211ENST00000413186 MIER3Q7Z3K6 550 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 APBB1IPQ7Z5R6 666 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-211ENST00000413186 MLXIPQ9HAP2 919 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 CRYBG1Q9Y4K1 1723 aa9.55□□□□□ -0.88
SYNE1-211ENST00000413186 ECM2O94769 699 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-211ENST00000413186 ZNF543Q08ER8 600 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 USP50Q70EL3 339 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-211ENST00000413186 OTUD6AQ7L8S5 288 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 SPC24Q8NBT2 197 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 WDR11Q9BZH6 1224 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 POLR3EQ9NVU0 708 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 SMTNP53814 917 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 SCYL3Q8IZE3 742 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 AK8Q96MA6 479 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 PAIP2Q9BPZ3 127 aaKnown RBP9.54□□□□□ -0.88
SYNE1-211ENST00000413186 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-211ENST00000413186 GLI3P10071 1580 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 POLR2DO15514 142 aaKnown RBP9.54□□□□□ -0.88
SYNE1-211ENST00000413186 NPM3O75607 178 aaKnown RBP9.54□□□□□ -0.88
SYNE1-211ENST00000413186 SNAPC2Q13487 334 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 COG2Q14746 738 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 IFT74Q96LB3 600 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 DEF6Q9H4E7 631 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 NDUFB10O96000 172 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 SLC39A14Q15043 492 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 APOBEC3HQ6NTF7 200 aaKnown RBP9.54□□□□□ -0.88
SYNE1-211ENST00000413186 CNNM4Q6P4Q7 775 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 IPO4Q8TEX9 1081 aaKnown RBP9.54□□□□□ -0.88
SYNE1-211ENST00000413186 CTAGE1Q96RT6 745 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 ACBD3Q9H3P7 528 aa9.54□□□□□ -0.88
SYNE1-211ENST00000413186 WNT10BO00744 389 aa9.53□□□□□ -0.88
SYNE1-211ENST00000413186 PPP6R2O75170 966 aa9.53□□□□□ -0.88
SYNE1-211ENST00000413186 CMA1P23946 247 aa9.53□□□□□ -0.88
SYNE1-211ENST00000413186 CAP2P40123 477 aa9.53□□□□□ -0.88
SYNE1-211ENST00000413186 NAP1L1P55209 391 aaKnown RBP9.53□□□□□ -0.88
SYNE1-211ENST00000413186 PTGDRQ13258 359 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms