RNA–Protein interactions for RNA: ENST00000405578.8

RPAIN-204, Transcript of RPA interacting protein, humanhuman

TSL 2 BASIC

Gene RPAIN, Length 1,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-204ENST00000405578 WDR19Q8NEZ3 1342 aa12.34□□□□□ -0.43
RPAIN-204ENST00000405578 A0A1W2PRG0 241 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 F5H6K3 240 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 CASTP20810 708 aaKnown RBP12.33□□□□□ -0.44
RPAIN-204ENST00000405578 KLRC3Q07444 240 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 SYNE3Q6ZMZ3 975 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 NFXL1Q6ZNB6 911 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 CYB5R4Q7L1T6 521 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 GPR142Q7Z601 462 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 SIAH1Q8IUQ4 282 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 LRRC47Q8N1G4 583 aaKnown RBP12.33□□□□□ -0.44
RPAIN-204ENST00000405578 ENAHQ8N8S7 591 aaPredicted RBP12.33□□□□□ -0.44
RPAIN-204ENST00000405578 GMCL1P1Q8NEA9 526 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 ANKS1AQ92625 1134 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 BADQ92934 168 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 PAGR1Q9BTK6 254 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 BACH2Q9BYV9 841 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 EMILIN3Q9NT22 766 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 PLXNA1Q9UIW2 1896 aa12.33□□□□□ -0.44
RPAIN-204ENST00000405578 BAZ2AQ9UIF9 1905 aaKnown RBP12.33□□□□□ -0.44
RPAIN-204ENST00000405578 TCF20Q9UGU0 1960 aaKnown RBP12.32□□□□□ -0.44
RPAIN-204ENST00000405578 CCDC69A6NI79 296 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 USP17L15C9J2P7 530 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 USP17L13C9JLJ4 530 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 USP17L11C9JVI0 530 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 USP17L18D6R9N7 530 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 USP17L22D6RA61 530 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 USP17L17D6RBQ6 530 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 USP17L19D6RCP7 530 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 USP17L20D6RJB6 530 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 DNM1LO00429 736 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 WDR46O15213 610 aaKnown RBP12.32□□□□□ -0.44
RPAIN-204ENST00000405578 VCAM1P19320 739 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 CNGA1P29973 690 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 SLC1A4P43007 532 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 NOVP48745 357 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 ERVK-9P63128 1117 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 ERVK-24P63145 666 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 USP17L24Q0WX57 530 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 Q3C1V9 767 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 ADCK5Q3MIX3 580 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 SLFN13Q68D06 897 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 CHST3Q7LGC8 479 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 PLEKHH3Q7Z736 793 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 CATIPQ7Z7H3 387 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 TMEM47Q9BQJ4 181 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 CWC22Q9HCG8 908 aaKnown RBP12.32□□□□□ -0.44
RPAIN-204ENST00000405578 RBPJLQ9UBG7 517 aa12.32□□□□□ -0.44
RPAIN-204ENST00000405578 DDX20Q9UHI6 824 aaKnown RBP12.32□□□□□ -0.44
RPAIN-204ENST00000405578 BDP1A6H8Y1 2624 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 NDUFB10O96000 172 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 RPS6KB1P23443 525 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 HOXA7P31268 230 aaPredicted RBP12.31□□□□□ -0.44
RPAIN-204ENST00000405578 LIFRP42702 1097 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 MAP2K5Q13163 448 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 MFSD14CQ5VZR4 134 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 RUFY3Q7L099 469 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 SPICE1Q8N0Z3 855 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 PNMA1Q8ND90 353 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 IL27Q8NEV9 243 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 DCAF4Q8WV16 495 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 GMCL1Q96IK5 515 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 TANGO6Q9C0B7 1094 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 RPAP3Q9H6T3 665 aaPredicted RBP12.31□□□□□ -0.44
RPAIN-204ENST00000405578 ZSWIM6Q9HCJ5 1215 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 FLRT1Q9NZU1 646 aa12.31□□□□□ -0.44
RPAIN-204ENST00000405578 SH2B2O14492 632 aaPredicted RBP12.3□□□□□ -0.44
RPAIN-204ENST00000405578 MSCO60682 206 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 BMP3P12645 472 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 RBM25P49756 843 aaKnown RBP12.3□□□□□ -0.44
RPAIN-204ENST00000405578 ANTXR2P58335 489 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 EXOSC10Q01780 885 aaKnown RBP12.3□□□□□ -0.44
RPAIN-204ENST00000405578 IKQ13123 557 aaPredicted RBP12.3□□□□□ -0.44
RPAIN-204ENST00000405578 GRIN2CQ14957 1233 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 ANKRD1Q15327 319 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 CCDC96Q2M329 555 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 TRIM60Q495X7 471 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 GJC2Q5T442 439 aaPredicted RBP12.3□□□□□ -0.44
RPAIN-204ENST00000405578 RCSD1Q6JBY9 416 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 IGDCC4Q8TDY8 1250 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 GTF3C2Q8WUA4 911 aaPredicted RBP12.3□□□□□ -0.44
RPAIN-204ENST00000405578 RNPC3Q96LT9 517 aaKnown RBP12.3□□□□□ -0.44
RPAIN-204ENST00000405578 PDLIM7Q9NR12 457 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 HOXC10Q9NYD6 342 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 MTMR7Q9Y216 660 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 SLC12A7Q9Y666 1083 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 ZNF236Q9UL36 1845 aa12.3□□□□□ -0.44
RPAIN-204ENST00000405578 GBF1Q92538 1859 aa12.29□□□□□ -0.44
RPAIN-204ENST00000405578 FLOT1O75955 427 aa12.29□□□□□ -0.44
RPAIN-204ENST00000405578 CALM1P0DP23 149 aa12.29□□□□□ -0.44
RPAIN-204ENST00000405578 CALM2P0DP24 149 aa12.29□□□□□ -0.44
RPAIN-204ENST00000405578 CALM3P0DP25 149 aa12.29□□□□□ -0.44
RPAIN-204ENST00000405578 COG2Q14746 738 aa12.29□□□□□ -0.44
RPAIN-204ENST00000405578 SEC23AQ15436 765 aa12.29□□□□□ -0.44
RPAIN-204ENST00000405578 FAM83BQ5T0W9 1011 aa12.29□□□□□ -0.44
RPAIN-204ENST00000405578 GPATCH4Q5T3I0 446 aaKnown RBP12.29□□□□□ -0.44
RPAIN-204ENST00000405578 WDR78Q5VTH9 848 aa12.29□□□□□ -0.44
RPAIN-204ENST00000405578 SLC39A5Q6ZMH5 540 aa12.29□□□□□ -0.44
RPAIN-204ENST00000405578 CATSPERGQ6ZRH7 1159 aa12.29□□□□□ -0.44
RPAIN-204ENST00000405578 SH3RF1Q7Z6J0 888 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms